Hg_chrom3_TN10mRNA_6890
Organism: Heterodera glycines Gene Locus: chr3:14137633-14139415 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 0.866 | 1.042 | 0.494 | 1.098 | 0.735 | 0.341 | 1.146 | 2.165 | 1.433 | 1.476 | 2.36 | 1.671 | 0.661 | 1.286 | 0.982 | 0.799 | 0.564 | 1.102 | 0.506 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6529
|
— | — |
1.556
|
1.000
|
1.000
|
2.000
|
— |
2.000
|
1.000
|
3.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
RKLTSDTEMKDIFERIKKF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.392
|
0.440
|
0.022
|
0.313
|
0.254
|
0.123
|
0.049
|
0.280
|
0.084
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000368
|
7.000
|
1.000
|
Hsc_gene_24056.t2
|
Hsc_gene_2839.t1;Hsc_gene_2840.t1
|
— |
Q80WQ9.1 Zinc finger BED domain-containing protein 4 [Mus musculus]
|
KIH53449.1 dimerization domain protein, hAT family [Ancylostoma duodenale]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.918|GO:0110165_0.908|GO:0005622_0.869|GO:0016020_0.841|GO:0043226_0.824|GO:0043229_0.807|GO:0005737_0.804|GO:0043227_0.758|GO:0043231_0.754|GO:0003674_0.654|GO:0005634_0.623|GO:0031974_0.579|GO:0043233_0.577|GO:0070013_0.577|GO:0031981_0.573|GO:0005488_0.572|GO:0005654_0.555|GO:0005515_0.537
|
IPR012337+56-324+|IPR052035+3-329+
|
— | — | — |
PTHR46481+3-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
40658.770
|
9.983
|
17.000
|
30.659
|
11.461
|
48.997
|
51.003
|
18.338
|
12.321
|
38.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
27.180
|
15.070
|
6.479
|
9.682
|
3.731
|
5.809
|
1.115
|
4.594
|
1.028
|
100.710
|
57.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.435
|
-0.775
|
— |
-1.411
|
— |
-2.373
|
— | — | — | — | — | — | — |
No JSON data available for plots.