Hg_chrom3_TN10mRNA_6893
Organism: Heterodera glycines Gene Locus: chr3:14178905-14181738 Feature type: polypeptideProtein Sequence
Length: 237
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.472 | 1.074 | 0.436 | 1.195 | 0.757 | 0.502 | 0.633 | 1.406 | 1.14 | 1.534 | 1.737 | 1.641 | 0.73 | 0.689 | 1.025 | 0.623 | 1.151 | 0.325 | 0.869 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6532
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
chloroplast
|
— | — | — |
46-87
|
0.956
|
1-21
|
0.943
|
0.998
|
0.000
|
0.000
|
0.627
|
0.088
|
0.017
|
0.592
|
0.118
|
0.124
|
0.038
|
0.015
|
0.082
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000401
|
7.000
|
1.000
|
Hsc_gene_16485.t1
|
— | — | — |
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.834|GO:0110165_0.790|GO:0005622_0.755|GO:0008150_0.690|GO:0043226_0.618|GO:0043229_0.591|GO:0003674_0.534|GO:0005737_0.522|GO:0016020_0.518
|
IPR000210+44-164_53-127_53-165+|IPR011333+26-166_35-159+
|
SM00225+53-165+
|
PF00651+44-164+BTB/POZ_domain
|
— |
PTHR45774+182-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-237
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
26716.780
|
7.761
|
2.500
|
27.848
|
10.549
|
48.101
|
51.899
|
14.768
|
13.080
|
48.101
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
43.150
|
0.157
|
0.515
|
2.175
|
1.843
|
0.887
|
0.509
|
0.000
|
2.747
|
184.440
|
106.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.678
|
— | — | — | — | — | — |
-6.143
|
— |
-6.320
|
— | — |