Hg_chrom3_TN10mRNA_6894
Organism: Heterodera glycines Gene Locus: chr3:14184631-14188557 Feature type: polypeptideProtein Sequence
Length: 603
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 1.273 | 1.025 | 0.629 | 1.575 | 0.68 | 0.691 | 0.663 | 1.695 | 1.121 | 1.508 | 1.073 | 1.935 | 0.446 | 0.981 | 1.09 | 0.517 | 0.754 | 1.021 | 0.78 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6533
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKREYTDVQFLVGKDGKK
|
— | — | — | — |
1-22
|
0.992
|
1.000
|
0.000
|
0.000
|
0.577
|
0.153
|
0.035
|
0.630
|
0.103
|
0.215
|
0.052
|
0.008
|
0.155
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000065
|
13.000
|
6.000
|
Hsc_gene_12165.t1;Hsc_gene_12167.t1;Hsc_gene_15114.t1;Hsc_gene_16150.t1;Hsc_gene_16487.t1;Hsc_gene_16489.t1
|
— | — | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.803|GO:0110165_0.787|GO:0008150_0.700|GO:0005622_0.671|GO:0005737_0.585|GO:0009987_0.575|GO:0043226_0.558|GO:0043229_0.540|GO:0016020_0.517
|
IPR000210+52-156_61-120_61-158+|IPR002083+313-446_315-427_318-439_466-598_468-579_471-591+|IPR008974+302-455_456-602+|IPR011333+30-184_42-152+|IPR011705+162-271_166-269+
|
SM00061+315-427_468-579+|SM00225+61-158+|SM00875+162-271+
|
PF00651+52-156+BTB/POZ_domain|PF07707+166-269+BTB_And_C-terminal_Kelch|PF22486+318-439_471-591+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+184-292+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+34-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-603
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
69104.040
|
6.883
|
2.000
|
31.177
|
12.272
|
50.083
|
49.917
|
16.086
|
15.091
|
43.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
183.517
|
10.835
|
35.826
|
1059.252
|
361.189
|
52.407
|
48.761
|
32.992
|
180.680
|
66.904
|
115.665
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.502
|
6.480
|
4.997
|
-1.583
|
-2.771
|
— |
-0.781
|
0.708
|
— | — | — | — | — |