Hg_chrom3_TN10mRNA_6897
Organism: Heterodera glycines Gene Locus: chr3:14199889-14231438 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.624 | 1.179 | 1.032 | 1.413 | 0.575 | 0.594 | 0.249 | 1.94 | 1.213 | 1.096 | 0.88 | 1.663 | 0.575 | 0.967 | 1.283 | 0.45 | 0.831 | 1.151 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6536
|
— |
Hg_chrom3_TN10gene_6536
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.738
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.568
|
0.177
|
0.025
|
0.596
|
0.186
|
0.305
|
0.084
|
0.029
|
0.162
|
0.161
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1;Hsc_gene_2968.t1
|
— |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3416310.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.748|GO:0110165_0.741|GO:0005622_0.656|GO:0005737_0.618|GO:0008150_0.602|GO:0043226_0.581|GO:0043229_0.567
|
IPR002083+204-343_208-345_209-324+|IPR008974+195-354+|IPR011333+1-72+|IPR011705+49-159_54-155+
|
SM00061+209-324+|SM00875+49-159+
|
PF07707+54-155+BTB_And_C-terminal_Kelch|PF22486+208-345+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+71-177+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+1-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
45579.950
|
4.721
|
-11.000
|
27.431
|
10.723
|
48.379
|
51.621
|
12.469
|
14.963
|
47.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
137.724
|
13.851
|
17.819
|
14.628
|
13.781
|
12.027
|
22.071
|
16.780
|
2.056
|
559.392
|
320.534
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.882
|
— | — |
-8.123
|
— |
-5.111
|
— | — |
No JSON data available for plots.