Hg_chrom3_TN10mRNA_6900
Organism: Heterodera glycines Gene Locus: chr3:14231544-14231855 Feature type: polypeptideProtein Sequence
Length: 69
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.18 | 0.337 | 1.845 | 0.0 | 1.449 | 0.372 | 0.69 | 1.449 | 0.966 | 1.371 | 1.537 | 2.558 | 2.013 | 0.279 | 0.887 | 0.828 | 0.475 | 1.098 | 0.0 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6539
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.710
|
0.144
|
0.027
|
0.581
|
0.049
|
0.085
|
0.080
|
0.040
|
0.065
|
0.322
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000121
|
12.000
|
2.000
|
Hsc_gene_14524.t3;Hsc_gene_25683.t1
|
— | — | — |
KAI3408201.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.652|GO:0110165_0.643|GO:0008150_0.559|GO:0005622_0.549|GO:0005737_0.527
|
IPR000210+10-59_19-69+|IPR011333+1-67_2-57+
|
— |
PF00651+10-59+BTB/POZ_domain
|
— |
PTHR45774+3-60+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-69
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
7773.920
|
5.062
|
-2.000
|
36.232
|
11.594
|
47.826
|
52.174
|
17.391
|
18.841
|
44.928
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
11.411
|
0.462
|
2.002
|
0.253
|
0.355
|
0.997
|
1.215
|
1.078
|
0.000
|
47.537
|
27.164
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-2.890
|
— | — | — | — | — | — | — |
-6.471
|
— | — |
No JSON data available for plots.