Hg_chrom3_TN10mRNA_6902
Organism: Heterodera glycines Gene Locus: chr3:14241079-14242033 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.571 | 1.474 | 1.631 | 1.464 | 0.52 | 0.724 | 1.014 | 1.502 | 1.004 | 1.331 | 1.59 | 1.502 | 0.39 | 0.689 | 0.772 | 0.554 | 0.921 | 1.559 | 0.596 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6541
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.654
|
0.141
|
0.021
|
0.457
|
0.224
|
0.136
|
0.040
|
0.012
|
0.233
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003727
|
2.000
|
1.000
|
Hsc_gene_5282.t1
|
— | — | — |
KAI3415241.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.917|GO:0009987_0.850|GO:0003674_0.841|GO:0065007_0.778|GO:0050789_0.768|GO:0003824_0.740|GO:0005575_0.698|GO:0110165_0.698|GO:0016787_0.689|GO:0065008_0.687|GO:0031647_0.674|GO:0140096_0.673|GO:0008233_0.663|GO:0005622_0.653|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0005737_0.628|GO:0043226_0.587|GO:0016020_0.585|GO:0008152_0.569|GO:0043229_0.562|GO:0005488_0.559|GO:0043227_0.552|GO:0044238_0.542|GO:0043231_0.541|GO:0044237_0.538|GO:0050794_0.533|GO:0005515_0.524|GO:0009058_0.524|GO:0043170_0.519|GO:0044249_0.507|GO:0071840_0.507|GO:0009059_0.506|GO:0019538_0.506
|
IPR002083+53-126+|IPR008974+42-145+
|
— |
PF22486+53-126+MATH_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-148
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
16849.170
|
4.734
|
-5.500
|
31.081
|
11.486
|
48.649
|
51.351
|
14.189
|
16.892
|
48.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
43.780
|
3.358
|
14.417
|
13.013
|
12.363
|
10.302
|
7.499
|
20.311
|
0.000
|
161.063
|
92.036
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.868
|
1.816
|
— | — | — | — |
0.874
|
-1.297
|
— |
4.559
|
— | — | — |
No JSON data available for plots.