Hg_chrom3_TN10mRNA_6909
Organism: Heterodera glycines Gene Locus: chr3:14277381-14278973 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.677 | 1.013 | 1.244 | 1.148 | 0.504 | 0.468 | 0.82 | 1.093 | 1.063 | 1.341 | 2.122 | 1.457 | 0.631 | 0.87 | 1.265 | 0.484 | 1.391 | 1.009 | 0.675 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6548
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.450
|
0.197
|
0.049
|
0.554
|
0.157
|
0.157
|
0.085
|
0.019
|
0.127
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000121
|
12.000
|
2.000
|
Hsc_gene_14524.t3;Hsc_gene_25683.t1
|
— | — |
Q8K2J9.3 BTB/POZ domain-containing protein 6 [Mus musculus]
|
KAI3408201.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.763|GO:0110165_0.757|GO:0005622_0.708|GO:0008150_0.690|GO:0043226_0.640|GO:0043229_0.633|GO:0009987_0.624|GO:0003674_0.593|GO:0005737_0.539|GO:0016020_0.530
|
IPR000210+9-109_18-97_18-122+|IPR002083+157-300_209-302+|IPR008974+181-305+|IPR011333+2-121_5-110+
|
SM00225+18-122+
|
PF00651+9-109+BTB/POZ_domain|PF22486+209-302+MATH_domain
|
— |
PTHR45774+8-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
34488.770
|
7.731
|
4.500
|
27.213
|
10.492
|
48.197
|
51.803
|
14.754
|
12.459
|
51.148
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
magenta
|
29.527
|
37.987
|
40.677
|
34.194
|
34.842
|
23.867
|
73.069
|
11.434
|
0.000
|
33.153
|
18.945
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.622
|
-1.168
|
2.816
|
— |
5.953
|
— | — | — |
No JSON data available for plots.