Hg_chrom3_TN10mRNA_6910
Organism: Heterodera glycines Gene Locus: chr3:14280987-14281654 Feature type: polypeptideProtein Sequence
Length: 128
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.544 | 0.727 | 1.42 | 0.269 | 1.432 | 0.2 | 0.465 | 1.172 | 0.868 | 1.372 | 1.302 | 2.298 | 1.519 | 1.052 | 0.478 | 1.116 | 0.128 | 1.184 | 0.0 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6549
|
— | — |
2.222
|
4.000
|
2.000
|
1.000
|
1.000
|
2.000
|
5.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.730
|
0.117
|
0.093
|
0.642
|
0.063
|
0.203
|
0.082
|
0.055
|
0.118
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000121
|
12.000
|
2.000
|
Hsc_gene_14524.t3;Hsc_gene_25683.t1
|
— | — |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.784|GO:0110165_0.757|GO:0005622_0.695|GO:0008150_0.672|GO:0005737_0.575|GO:0043226_0.558|GO:0043229_0.550|GO:0009987_0.521|GO:0016020_0.501
|
IPR000210+10-118_19-96_19-127+|IPR011333+1-123_4-116+
|
SM00225+19-127+
|
PF00651+10-118+BTB/POZ_domain
|
— |
PTHR45774+5-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-128
|
2vkp_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
14079.160
|
4.646
|
-5.500
|
29.688
|
10.938
|
42.188
|
57.812
|
13.281
|
16.406
|
50.781
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
magenta
|
3.994
|
3.444
|
4.333
|
2.611
|
2.511
|
4.338
|
10.576
|
1.107
|
0.000
|
6.631
|
3.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
3.407
|
— | — | — | — | — |
No JSON data available for plots.