Hg_chrom3_TN10mRNA_6913
Organism: Heterodera glycines Gene Locus: chr3:14292626-14293194 Feature type: polypeptideProtein Sequence
Length: 114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 0.816 | 0.319 | 0.0 | 1.023 | 0.0 | 0.94 | 1.754 | 0.975 | 0.948 | 1.063 | 2.58 | 0.244 | 0.843 | 3.222 | 1.378 | 2.013 | 0.266 | 2.699 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6552
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
— |
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RREMKRLMVLAAAGRRKEL,GRRKELHSRLRGRLATRALRSGWERRNEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.597
|
0.358
|
0.012
|
0.435
|
0.070
|
0.012
|
0.026
|
0.039
|
0.169
|
0.348
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002013
|
1.000
|
3.000
|
Hsc_gene_11239.t1;Hsc_gene_11308.t1;Hsc_gene_12261.t1
|
— | — | — | — |
WP_217326438
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-114
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
13081.010
|
12.421
|
19.000
|
34.211
|
7.895
|
59.649
|
40.351
|
26.316
|
7.895
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
white
|
1.527
|
0.545
|
2.522
|
3.282
|
3.860
|
4.753
|
2.436
|
0.419
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.461
|
— | — | — | — |
-3.626
|
2.696
|
— | — | — | — | — |
No JSON data available for plots.