Hg_chrom3_TN10mRNA_6914
Organism: Heterodera glycines Gene Locus: chr3:14294509-14296279 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.474 | 0.328 | 0.512 | 0.0 | 0.587 | 0.903 | 1.425 | 1.761 | 1.565 | 1.237 | 1.707 | 0.829 | 0.391 | 0.948 | 1.437 | 0.905 | 0.808 | 0.747 | 0.0 | 0.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6553
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.809
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KGKAGKDSGKAKSKKIISRSARAG
|
17-41
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.532
|
0.252
|
0.193
|
0.512
|
0.181
|
0.085
|
0.259
|
0.004
|
0.167
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002014
|
2.000
|
2.000
|
Hsc_gene_11242.t1;Hsc_gene_7428.t1
|
Hsc_gene_11242.t1;Hsc_gene_7109.t1;Hsc_gene_7428.t1
|
R08C7.3
|
Q27511.3 Histone H2A.V [Caenorhabditis elegans]
|
KAF7638333.1 Histone H2A [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.827|GO:0110165_0.818|GO:0005622_0.744|GO:0043226_0.739|GO:0016020_0.724|GO:0043229_0.687|GO:0043227_0.674|GO:0043231_0.621|GO:0008150_0.613|GO:0009987_0.555|GO:0005634_0.502
|
IPR002119+8-128_10-125_13-125_19-41_49-64_64-77_78-92_105-123+|IPR007125+14-96+|IPR009072+5-131_6-105+|IPR032454+98-127+|IPR032458+27-33+
|
SM00414+8-128+
|
PF00125+14-96+Core_histone_H2A/H2B/H3/H4|PF16211+98-127+C-terminus_of_histone_H2A
|
G3DSA:1.10.20.10:FF:000005+6-130+Histone_H2A
|
PTHR23430+13-125+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;122-142
|
1.000
|
21-121
|
9c62_N
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
15054.590
|
11.352
|
19.500
|
28.169
|
7.042
|
44.366
|
55.634
|
21.831
|
6.338
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1157.248
|
1243.268
|
759.267
|
1390.049
|
1329.147
|
931.613
|
1101.290
|
908.876
|
275.817
|
1982.282
|
1250.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.939
|
— |
0.980
|
— |
-0.497
|
0.251
|
— |
0.418
|
-2.946
|
— | — | — | — |
No JSON data available for plots.