Hg_chrom3_TN10mRNA_6916
Organism: Heterodera glycines Gene Locus: chr3:14304355-14309953 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 1.032 | 1.192 | 0.802 | 1.304 | 0.813 | 0.579 | 1.163 | 1.128 | 1.2 | 1.025 | 0.871 | 1.762 | 0.976 | 0.863 | 1.117 | 0.659 | 0.769 | 1.301 | 0.808 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6555
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.792
|
0.156
|
0.004
|
0.425
|
0.059
|
0.156
|
0.099
|
0.008
|
0.098
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003728
|
2.000
|
1.000
|
Hsc_gene_11244.t1
|
— | — |
Q0V9W6.2 BTB/POZ domain-containing protein 6 [Xenopus tropicalis]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.752|GO:0110165_0.745|GO:0005622_0.668|GO:0008150_0.660|GO:0009987_0.590|GO:0043226_0.568|GO:0043229_0.549|GO:0005737_0.533|GO:0003674_0.506
|
IPR000210+23-66_26-124_26-158_99-153+|IPR002083+318-454_319-454_321-454_323-433+|IPR008974+304-458+|IPR011333+3-155_12-153+
|
SM00061+323-433+|SM00225+26-158+
|
PF00651+23-66_99-153+BTB/POZ_domain|PF22486+321-454+MATH_domain
|
— |
PTHR45774+13-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-473
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
53255.270
|
5.084
|
-10.500
|
27.696
|
13.108
|
47.146
|
52.854
|
13.319
|
14.376
|
49.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
821.538
|
455.448
|
771.793
|
578.412
|
654.566
|
744.529
|
1087.511
|
754.012
|
343.118
|
1444.540
|
972.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
0.207
|
-0.308
|
0.146
|
0.201
|
0.558
|
— |
0.672
|
— | — | — | — | — |
No JSON data available for plots.