Hg_chrom3_TN10mRNA_6917
Organism: Heterodera glycines Gene Locus: chr3:14304821-14309958 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.093 | 0.994 | 1.204 | 0.81 | 1.318 | 0.822 | 0.585 | 1.175 | 1.14 | 1.213 | 1.036 | 0.754 | 1.721 | 0.986 | 0.872 | 1.099 | 0.666 | 0.777 | 1.315 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6555
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.787
|
0.157
|
0.005
|
0.434
|
0.058
|
0.166
|
0.102
|
0.009
|
0.099
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003728
|
2.000
|
1.000
|
Hsc_gene_11244.t1
|
— | — |
Q0V9W6.2 BTB/POZ domain-containing protein 6 [Xenopus tropicalis]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.752|GO:0110165_0.745|GO:0005622_0.668|GO:0008150_0.660|GO:0009987_0.590|GO:0043226_0.569|GO:0043229_0.549|GO:0005737_0.533|GO:0003674_0.506
|
IPR000210+18-61_21-119_21-153_94-148+|IPR002083+313-449_314-449_316-449_318-428+|IPR008974+299-453+|IPR011333+1-150_9-148+
|
SM00061+318-428+|SM00225+21-153+
|
PF00651+18-61_94-148+BTB/POZ_domain|PF22486+316-449+MATH_domain
|
— |
PTHR45774+8-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
52612.540
|
5.084
|
-10.500
|
27.991
|
12.821
|
47.222
|
52.778
|
13.462
|
14.530
|
49.573
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
821.538
|
455.448
|
771.793
|
578.412
|
654.566
|
744.529
|
1087.511
|
754.012
|
343.118
|
1444.540
|
972.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
0.207
|
-0.308
|
0.146
|
0.201
|
0.558
|
— |
0.672
|
— | — | — | — | — |
No JSON data available for plots.