Hg_chrom3_TN10mRNA_6935
Organism: Heterodera glycines Gene Locus: chr3:14453948-14455932 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 1.325 | 1.151 | 0.291 | 0.985 | 1.515 | 0.578 | 1.582 | 1.641 | 0.969 | 0.448 | 1.241 | 1.524 | 1.136 | 1.981 | 0.904 | 0.692 | 0.671 | 1.298 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6572
|
— | — |
1.889
|
1.000
|
2.000
|
1.000
|
2.000
|
3.000
|
2.000
|
1.000
|
4.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.756
|
0.103
|
0.039
|
0.412
|
0.131
|
0.064
|
0.043
|
0.012
|
0.237
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003646
|
2.000
|
1.000
|
Hsc_gene_24317.t1
|
Hsc_gene_15262.t1
|
— | — |
XP_032078009.1 activating transcription factor 7-interacting protein 1 isoform X3 [Thamnophis elegans]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
IPR007588+3-51+|IPR018289+179-268+
|
— |
PF04500+3-51+FLYWCH_zinc_finger_domain|PF10551+179-268+MULE_transposase_domain
|
— |
PTHR47160+139-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-92;393-474
|
1.000
|
93-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
54832.890
|
8.183
|
9.500
|
28.059
|
12.869
|
50.211
|
49.789
|
15.823
|
12.236
|
45.992
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
46.458
|
8.140
|
16.844
|
1.760
|
2.661
|
0.490
|
0.406
|
0.967
|
234.696
|
15.506
|
109.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
-2.348
|
-3.158
|
— | — | — | — | — | — |
-6.890
|
— | — | — |
No JSON data available for plots.