SCN Proteipedia

Hg_chrom3_TN10mRNA_6936

Organism: Heterodera glycines Gene Locus: chr3:14456671-14461800 Feature type: polypeptide

Protein Sequence

Length: 240

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.727	0.678	1.136	1.58	1.181	0.748	0.942	1.042	1.111	0.845	0.631	2.206	0.694	2.003	0.765	1.607	0.82	0.694	1.923	0.245	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6573	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.672	0.155	0.009	0.595	0.202	0.153	0.242	0.017	0.092	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002017	3.000	1.000	Hsc_gene_13542.t1	Hsc_gene_13537.t1;Hsc_gene_13538.t1;Hsc_gene_13542.t1	—	Q20052.1 Anaphase-promoting complex subunit 11 [Caenorhabditis elegans]	KAH7729508.1 anaphase promoting complex subunit 11 [Aphelenchus avenae]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005680\|GO:0008270\|GO:0031145\|GO:0061630\|GO:0097602	GO:0008150_0.946\|GO:0009987_0.734\|GO:0005575_0.732\|GO:0110165_0.729\|GO:0003674_0.727\|GO:0005622_0.654\|GO:0008152_0.645\|GO:0043170_0.632\|GO:0044238_0.624\|GO:0016020_0.608\|GO:0016043_0.592\|GO:0071840_0.592\|GO:0043226_0.591\|GO:0019538_0.578\|GO:0043229_0.565\|GO:0043227_0.558\|GO:0043231_0.554\|GO:0003824_0.553\|GO:0006996_0.550\|GO:0140096_0.544\|GO:0009056_0.542\|GO:0007049_0.537\|GO:0000280_0.536\|GO:0022402_0.536\|GO:0048285_0.536\|GO:0009057_0.532\|GO:0007059_0.529\|GO:0098813_0.529\|GO:0016740_0.526\|GO:0006508_0.525\|GO:0016746_0.523\|GO:0030163_0.522\|GO:0004842_0.518\|GO:0016755_0.518\|GO:0019787_0.518\|GO:0043632_0.517\|GO:0051603_0.517\|GO:0006511_0.516\|GO:0010498_0.516\|GO:0019941_0.516\|GO:0031145_0.512\|GO:0043161_0.512	IPR001841+177-232+\|IPR013083+147-239+\|IPR024991+174-237_174-238+\|IPR051031+151-237+	—	PF12861+174-238+Anaphase-promoting_complex_subunit_11_RING-H2_finger	—	PTHR11210+151-237+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-80	1.000	81-240	9n9s_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.693	25938.250	4.494	-10.500	23.333	7.917	45.417	54.583	10.000	13.333	59.167

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	384.747	294.033	278.554	273.851	341.842	340.605	563.713	351.818	93.072	696.809	438.065

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.308	-0.240	—	0.288	—	0.739	—	0.825	-3.026	—	—	—	—

No JSON data available for plots.

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