Hg_chrom3_TN10mRNA_6938
Organism: Heterodera glycines Gene Locus: chr3:14472937-14474996 Feature type: polypeptideProtein Sequence
Length: 210
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.326 | 1.218 | 0.519 | 0.657 | 0.635 | 0.733 | 0.68 | 1.19 | 1.058 | 1.48 | 0.866 | 0.28 | 1.058 | 0.824 | 0.875 | 0.884 | 0.781 | 1.443 | 0.0 | 0.14 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6575
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.818
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
15-36
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.049
|
0.855
|
0.067
|
0.141
|
0.028
|
0.043
|
0.107
|
0.018
|
0.057
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003729
|
2.000
|
1.000
|
Hsc_gene_13536.t1
|
Hsc_gene_13536.t1;Hsc_gene_13540.t1;Hsc_gene_13540.t2;Hsc_gene_13540.t3
|
— |
Q93615.2 Probable electron transfer flavoprotein subunit alpha, mitochondrial [Caenorhabditis elegans]
|
KAF7638330.1 ETF domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009055|GO:0050660
|
GO:0005575_0.875|GO:0110165_0.869|GO:0005622_0.769|GO:0005737_0.769|GO:0016020_0.758|GO:0043226_0.672|GO:0043229_0.661|GO:0043227_0.637|GO:0043231_0.625|GO:0005739_0.544
|
IPR001308+31-201+|IPR014729+31-206+|IPR014730+34-199_34-210+|IPR033947+33-199+
|
SM00893+34-210+
|
PF01012+34-199+Electron_transfer_flavoprotein_domain
|
G3DSA:3.40.50.620:FF:000041+32-206+Electron_transfer_flavoprotein_alpha_subunit
|
PTHR43153+31-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-210
|
1efv_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
21683.180
|
10.004
|
9.500
|
19.048
|
6.667
|
38.095
|
61.905
|
12.381
|
6.667
|
60.476
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
168.876
|
152.959
|
308.133
|
238.764
|
329.587
|
359.467
|
206.351
|
235.802
|
56.182
|
10.048
|
29.819
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
0.505
|
-0.261
|
0.433
|
— |
-0.792
|
-0.714
|
— | — | — |
6.131
|
— | — |
No JSON data available for plots.