SCN Proteipedia

Hg_chrom3_TN10mRNA_6939

Organism: Heterodera glycines Gene Locus: chr3:14476463-14480197 Feature type: polypeptide

Protein Sequence

Length: 218

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.747	0.64	1.418	1.107	1.147	0.353	1.092	0.459	1.427	0.868	0.417	2.159	0.892	2.029	0.749	1.638	0.677	0.765	2.117	0.405	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6576	—	—	1.222	1.000	1.000	2.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.950

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.736	0.195	0.032	0.542	0.266	0.116	0.179	0.034	0.148	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002017	3.000	1.000	Hsc_gene_13542.t1	Hsc_gene_13537.t1;Hsc_gene_13538.t1;Hsc_gene_13542.t1	—	Q20052.1 Anaphase-promoting complex subunit 11 [Caenorhabditis elegans]	KAF7638329.1 RING-type domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005680\|GO:0008270\|GO:0031145\|GO:0061630\|GO:0097602	GO:0008150_0.941\|GO:0005575_0.740\|GO:0009987_0.734\|GO:0110165_0.734\|GO:0003674_0.701\|GO:0016020_0.657\|GO:0005622_0.622\|GO:0008152_0.603\|GO:0071840_0.591\|GO:0016043_0.590\|GO:0044238_0.580\|GO:0043226_0.577\|GO:0043170_0.572\|GO:0043227_0.569\|GO:0043229_0.562\|GO:0043231_0.557\|GO:0006996_0.552\|GO:0019538_0.550\|GO:0000280_0.539\|GO:0003824_0.539\|GO:0007049_0.539\|GO:0022402_0.539\|GO:0048285_0.539\|GO:0007059_0.535\|GO:0098813_0.535\|GO:0009056_0.526\|GO:0009057_0.517\|GO:0006508_0.511\|GO:0016740_0.510\|GO:0140096_0.509\|GO:0030163_0.508\|GO:0016746_0.506\|GO:0051603_0.504	IPR013083+146-202+\|IPR024991+173-201+\|IPR051031+150-200+	—	PF12861+173-201+Anaphase-promoting_complex_subunit_11_RING-H2_finger	—	PTHR11210+150-200+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-79	1.000	80-218	9n9s_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.547	23397.300	4.009	-17.000	22.018	8.257	41.743	58.257	7.339	14.679	60.550

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	362.073	27.173	20.071	15.342	9.632	11.093	28.500	19.572	34.773	1508.719	877.028

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.669	-0.962	—	-0.706	—	1.374	—	0.686	-5.551	—	-6.733	—	—

No JSON data available for plots.

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