Hg_chrom3_TN10mRNA_6945
Organism: Heterodera glycines Gene Locus: chr3:14502305-14506570 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 0.567 | 1.508 | 1.177 | 1.138 | 0.375 | 1.161 | 0.488 | 1.518 | 0.791 | 0.443 | 2.009 | 0.949 | 1.97 | 0.597 | 1.742 | 0.64 | 0.739 | 2.251 | 0.43 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6582
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.765
|
0.189
|
0.046
|
0.509
|
0.256
|
0.126
|
0.162
|
0.039
|
0.130
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002017
|
3.000
|
1.000
|
Hsc_gene_13542.t1
|
Hsc_gene_13538.t1;Hsc_gene_13542.t1
|
— |
Q20052.1 Anaphase-promoting complex subunit 11 [Caenorhabditis elegans]
|
KAF7638329.1 RING-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
|
GO:0008150_0.939|GO:0005575_0.737|GO:0110165_0.732|GO:0009987_0.731|GO:0003674_0.702|GO:0016020_0.654|GO:0005622_0.620|GO:0008152_0.603|GO:0071840_0.589|GO:0016043_0.588|GO:0044238_0.580|GO:0043226_0.574|GO:0043170_0.570|GO:0043227_0.566|GO:0043229_0.560|GO:0043231_0.555|GO:0006996_0.552|GO:0019538_0.550|GO:0003824_0.541|GO:0000280_0.539|GO:0007049_0.539|GO:0022402_0.539|GO:0048285_0.539|GO:0007059_0.535|GO:0098813_0.535|GO:0009056_0.526|GO:0009057_0.517|GO:0006508_0.511|GO:0016740_0.510|GO:0030163_0.508|GO:0140096_0.508|GO:0016746_0.506|GO:0051603_0.504
|
IPR013083+133-189+|IPR024991+160-188+|IPR051031+137-187+
|
— |
PF12861+160-188+Anaphase-promoting_complex_subunit_11_RING-H2_finger
|
— |
PTHR11210+137-187+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66
|
1.000
|
67-205
|
9n9s_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
21947.570
|
3.923
|
-18.000
|
21.951
|
8.780
|
41.951
|
58.049
|
6.829
|
15.122
|
60.976
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
83.569
|
34.932
|
24.645
|
21.095
|
18.263
|
23.770
|
87.773
|
50.502
|
7.248
|
262.312
|
152.999
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.733
|
-0.864
|
— | — | — |
1.895
|
0.978
|
0.941
|
-4.252
|
— | — | — | — |
No JSON data available for plots.