Hg_chrom3_TN10mRNA_6946
Organism: Heterodera glycines Gene Locus: chr3:14508123-14511000 Feature type: polypeptideProtein Sequence
Length: 288
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.453 | 0.505 | 0.958 | 0.984 | 1.246 | 0.909 | 1.042 | 0.54 | 1.548 | 0.894 | 1.838 | 1.061 | 1.002 | 1.134 | 1.488 | 1.082 | 0.368 | 0.801 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6583
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.505
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.348
|
0.291
|
0.025
|
0.507
|
0.124
|
0.229
|
0.327
|
0.031
|
0.547
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003730
|
2.000
|
1.000
|
Hsc_gene_13547.t1
|
Hsc_gene_13547.t1
|
— |
Q8WQC0.2 Regulator of G-protein signaling rgs-7 [Caenorhabditis elegans]
|
KAF7638328.1 RGS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.906|GO:0005575_0.836|GO:0110165_0.833|GO:0065007_0.817|GO:0050789_0.805|GO:0009987_0.803|GO:0050794_0.793|GO:0050896_0.752|GO:0003674_0.720|GO:0051716_0.687|GO:0005488_0.660|GO:0023052_0.657|GO:0007154_0.655|GO:0016020_0.652|GO:0007165_0.633|GO:0005515_0.630|GO:0005622_0.624|GO:0007186_0.562|GO:0071944_0.550
|
IPR016137+36-57_39-157_39-158_58-76_88-111_132-151+|IPR036305+28-159+|IPR044926+14-164+
|
SM00315+39-158+
|
PF00615+39-157+Regulator_of_G_protein_signaling_domain
|
G3DSA:1.10.167.10:FF:000001+63-139+Putative_regulator_of_g-protein_signaling_12
|
PTHR10845+26-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
201-288
|
1.000
|
1-200
|
2ode_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
31489.750
|
9.088
|
11.000
|
22.222
|
8.333
|
50.347
|
49.653
|
13.542
|
8.681
|
52.431
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
81.583
|
46.167
|
104.461
|
83.618
|
61.848
|
107.548
|
174.398
|
218.215
|
56.334
|
16.079
|
33.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
0.720
|
— |
-0.466
|
0.811
|
0.706
|
0.918
|
— | — | — | — | — | — |
No JSON data available for plots.