Hg_chrom3_TN10mRNA_6947
Organism: Heterodera glycines Gene Locus: chr3:14521345-14526284 Feature type: polypeptideProtein Sequence
Length: 538
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.102 | 1.297 | 0.541 | 0.641 | 0.682 | 2.002 | 1.129 | 1.487 | 0.454 | 1.306 | 0.648 | 1.421 | 0.826 | 0.965 | 1.176 | 1.779 | 1.006 | 0.507 | 0.429 | 0.328 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6584
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.893
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
PTTKRRG,KRNSVATGGGGTDKLQRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.275
|
0.221
|
0.045
|
0.573
|
0.136
|
0.201
|
0.257
|
0.070
|
0.499
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003730
|
2.000
|
1.000
|
Hsc_gene_13547.t1
|
Hsc_gene_13547.t1
|
— |
Q8WQC0.2 Regulator of G-protein signaling rgs-7 [Caenorhabditis elegans]
|
KAF7638328.1 RGS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.889|GO:0005575_0.820|GO:0110165_0.816|GO:0065007_0.804|GO:0009987_0.794|GO:0050789_0.792|GO:0050794_0.784|GO:0003674_0.733|GO:0050896_0.723|GO:0005488_0.686|GO:0051716_0.658|GO:0005515_0.648|GO:0016020_0.648|GO:0005622_0.629|GO:0023052_0.624|GO:0007154_0.621|GO:0007165_0.604|GO:0007186_0.536|GO:0071944_0.524
|
IPR016137+286-307_289-407_289-408_308-326_338-361_382-401+|IPR036305+278-409+|IPR044926+263-414+
|
SM00315+289-408+
|
PF00615+289-407+Regulator_of_G_protein_signaling_domain
|
G3DSA:1.10.167.10:FF:000001+313-389+Putative_regulator_of_g-protein_signaling_12
|
PTHR10845+122-412+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-215;451-538
|
1.000
|
216-450
|
5do9_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
57359.020
|
9.943
|
24.000
|
20.074
|
7.621
|
52.045
|
47.955
|
13.011
|
7.063
|
56.320
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
tan
|
396.606
|
197.605
|
432.225
|
357.577
|
230.792
|
456.985
|
421.859
|
433.032
|
953.910
|
70.941
|
449.356
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
0.719
|
— |
-0.663
|
1.001
|
— | — | — |
3.708
|
— | — | — | — |
No JSON data available for plots.