Hg_chrom3_TN10mRNA_6949
Organism: Heterodera glycines Gene Locus: chr3:14540101-14546068 Feature type: polypeptideProtein Sequence
Length: 500
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.558 | 0.651 | 1.018 | 0.552 | 0.733 | 1.231 | 0.738 | 2.1 | 1.022 | 1.081 | 0.788 | 1.765 | 1.611 | 1.5 | 1.592 | 1.371 | 0.918 | 0.667 | 0.154 | 1.059 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6586
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.879
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRYHRHQPNQKQRRG,RRRDKYAHHHEKRQRF
|
16-36
|
0.994
|
— | — | — | — |
0.001
|
— | — |
0.280
|
0.173
|
0.009
|
0.597
|
0.135
|
0.125
|
0.123
|
0.010
|
0.418
|
0.234
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003721
|
2.000
|
1.000
|
Hsc_gene_13548.t1
|
Hsc_gene_13548.t1;Hsc_gene_20556.t1;Hsc_gene_24811.t1;Hsc_gene_3434.t1;Hsc_gene_9652.t1
|
— | — |
KAI1730484.1 regulator of G-protein signaling rgs-7 [Ditylenchus destructor]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.922|GO:0110165_0.922|GO:0003674_0.858|GO:0005622_0.857|GO:0005488_0.816|GO:0005515_0.753|GO:0005737_0.738|GO:0071944_0.706|GO:0098772_0.671|GO:0030234_0.663|GO:0140677_0.663|GO:0008047_0.655|GO:0005096_0.650|GO:0030695_0.650|GO:0060589_0.650|GO:0005938_0.540
|
IPR035892+294-444+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
65-242;488-500
|
2.000
|
1-64;243-487
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.927
|
56824.640
|
9.655
|
25.500
|
27.200
|
13.800
|
50.000
|
50.000
|
17.200
|
10.000
|
48.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
460.827
|
280.391
|
211.898
|
127.345
|
101.303
|
281.584
|
285.732
|
156.197
|
677.102
|
966.625
|
842.544
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.632
|
-1.276
|
-0.627
|
-0.363
|
1.491
|
— |
-0.953
|
1.012
|
— | — | — | — | — |
No JSON data available for plots.