Hg_chrom3_TN10mRNA_6953
Organism: Heterodera glycines Gene Locus: chr3:14573434-14574629 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 0.456 | 1.159 | 0.0 | 1.144 | 1.508 | 0.759 | 0.49 | 0.763 | 1.524 | 1.485 | 2.307 | 1.906 | 0.848 | 1.1 | 0.49 | 0.482 | 0.891 | 0.754 | 1.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.699
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.267
|
0.443
|
0.046
|
0.724
|
0.478
|
0.175
|
0.149
|
0.056
|
0.228
|
0.303
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000300
|
7.000
|
2.000
|
Hsc_gene_13553.t1;Hsc_gene_19336.t1
|
Hsc_gene_13552.t1;Hsc_gene_22363.t1
|
— |
P91254.1 Probable glutathione S-transferase 8 [Caenorhabditis elegans]
|
KAI1708450.1 putative glutathione S-transferase 5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.842|GO:0003674_0.632|GO:0009987_0.631|GO:0005575_0.613|GO:0110165_0.604|GO:0005622_0.551|GO:0050896_0.537|GO:0003824_0.505|GO:0005737_0.505
|
IPR004045+2-81_6-75+|IPR004046+123-200+|IPR010987+83-204+|IPR036249+3-78+|IPR036282+79-202+|IPR050213+2-202+
|
— |
PF02798+6-75+Glutathione_S-transferase,_N-terminal_domain|PF14497+123-200+Glutathione_S-transferase,_C-terminal_domain
|
G3DSA:3.40.30.10:FF:000035+2-89+hematopoietic_prostaglandin_D_synthase
|
PTHR11571+2-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
23886.700
|
9.413
|
5.000
|
29.412
|
15.196
|
43.627
|
56.373
|
16.176
|
13.235
|
38.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
74.272
|
23.732
|
46.359
|
23.585
|
21.362
|
20.599
|
39.956
|
105.416
|
0.000
|
219.561
|
125.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
— |
-0.866
|
— | — |
0.966
|
2.258
|
-1.260
|
-8.583
|
5.417
|
— | — | — |
No JSON data available for plots.