Hg_chrom3_TN10mRNA_6957
Organism: Heterodera glycines Gene Locus: chr3:14596951-14598561 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.615 | 0.335 | 1.311 | 0.0 | 1.362 | 1.356 | 0.744 | 0.481 | 0.855 | 1.819 | 1.457 | 1.98 | 1.736 | 1.109 | 0.981 | 0.481 | 0.394 | 0.801 | 0.74 | 1.838 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6594
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.289
|
0.479
|
0.048
|
0.741
|
0.469
|
0.225
|
0.153
|
0.060
|
0.188
|
0.330
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000300
|
7.000
|
2.000
|
Hsc_gene_13553.t1;Hsc_gene_19336.t1
|
Hsc_gene_13552.t1;Hsc_gene_13553.t1;Hsc_gene_22363.t1
|
— |
P46436.3 Glutathione S-transferase 1 [Ascaris suum]
|
KAI1708450.1 putative glutathione S-transferase 5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.844|GO:0005575_0.639|GO:0009987_0.637|GO:0110165_0.635|GO:0003674_0.616|GO:0005622_0.586|GO:0050896_0.558|GO:0005737_0.550
|
IPR004045+3-82_7-76+|IPR004046+110-204+|IPR010987+84-208+|IPR036249+4-79+|IPR036282+80-206+|IPR040079+3-206+|IPR050213+5-206+
|
— |
PF02798+7-76+Glutathione_S-transferase,_N-terminal_domain|PF14497+110-204+Glutathione_S-transferase,_C-terminal_domain
|
G3DSA:1.20.1050.10:FF:000031+79-193+Glutathione_S-Transferase|G3DSA:3.40.30.10:FF:000035+3-90+hematopoietic_prostaglandin_D_synthase
|
PTHR11571+5-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-208
|
4q5f_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
24384.270
|
5.895
|
-1.000
|
30.769
|
14.423
|
43.269
|
56.731
|
15.385
|
15.385
|
37.019
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3104.526
|
2451.552
|
2612.358
|
1571.336
|
2963.900
|
3608.896
|
2416.171
|
7068.389
|
436.351
|
4745.315
|
2898.616
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.137
|
-0.779
|
-0.626
|
0.884
|
0.299
|
-0.569
|
0.875
|
-1.410
|
-3.543
|
— | — |
-5.084
|
— |
No JSON data available for plots.