Hg_chrom3_TN10mRNA_6959
Organism: Heterodera glycines Gene Locus: chr3:14607797-14609256 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.618 | 0.449 | 1.142 | 0.0 | 1.369 | 1.363 | 0.863 | 0.725 | 0.966 | 1.697 | 1.537 | 1.421 | 1.744 | 1.022 | 0.887 | 0.414 | 0.475 | 0.878 | 0.743 | 1.847 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6596
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.308
|
0.481
|
0.059
|
0.760
|
0.510
|
0.185
|
0.139
|
0.044
|
0.192
|
0.241
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000300
|
7.000
|
2.000
|
Hsc_gene_13553.t1;Hsc_gene_19336.t1
|
Hsc_gene_19336.t1
|
— |
P91254.1 Probable glutathione S-transferase 8 [Caenorhabditis elegans]
|
KAI1709035.1 putative glutathione S-transferase 5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.844|GO:0005575_0.650|GO:0110165_0.650|GO:0009987_0.629|GO:0003674_0.621|GO:0005622_0.605|GO:0005737_0.557|GO:0050896_0.556|GO:0003824_0.502
|
IPR004045+2-81_5-75+|IPR004046+118-203+|IPR010987+83-207+|IPR036249+3-78+|IPR036282+79-205+|IPR040079+1-205+|IPR050213+2-205+
|
— |
PF02798+5-75+Glutathione_S-transferase,_N-terminal_domain|PF14497+118-203+Glutathione_S-transferase,_C-terminal_domain
|
G3DSA:1.20.1050.10:FF:000031+78-192+Glutathione_S-Transferase|G3DSA:3.40.30.10:FF:000258+1-81+Glutathione_S-transferase
|
PTHR11571+2-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-207
|
3w8s_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
24131.920
|
7.309
|
1.500
|
30.435
|
14.976
|
43.478
|
56.522
|
15.942
|
14.493
|
37.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
5578.845
|
2573.754
|
3363.271
|
3040.317
|
3828.660
|
4984.848
|
5844.412
|
12957.056
|
597.095
|
10237.507
|
6105.902
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.159
|
0.103
|
— |
0.301
|
0.395
|
0.240
|
1.289
|
-1.012
|
-4.217
|
2.516
|
— | — | — |
No JSON data available for plots.