Hg_chrom3_TN10mRNA_6960
Organism: Heterodera glycines Gene Locus: chr3:14611697-14616519 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 0.879 | 0.937 | 0.355 | 1.031 | 1.234 | 1.514 | 1.203 | 0.916 | 1.254 | 0.833 | 1.415 | 1.432 | 0.397 | 1.964 | 1.178 | 0.563 | 0.625 | 0.793 | 0.202 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6597
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.652
|
0.199
|
0.038
|
0.372
|
0.062
|
0.096
|
0.117
|
0.053
|
0.114
|
0.174
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008224
|
1.000
|
1.000
|
Hsc_gene_19335.t3
|
Hsc_gene_19335.t2;Hsc_gene_19335.t3
|
— |
Q8BMD2.3 Cilium assembly protein DZIP1 [Mus musculus]
|
KAF7636058.1 C2H2-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.917|GO:0008150_0.917|GO:0110165_0.912|GO:0009987_0.857|GO:0005622_0.835|GO:0016020_0.810|GO:0065007_0.805|GO:0043226_0.796|GO:0043229_0.793|GO:0050789_0.789|GO:0050794_0.775|GO:0032501_0.759|GO:0050896_0.754|GO:0032502_0.752|GO:0048856_0.752|GO:0007275_0.742|GO:0043227_0.736|GO:0005737_0.732|GO:0048731_0.725|GO:0043231_0.724|GO:0071840_0.724|GO:0051716_0.719|GO:0016043_0.714|GO:0051179_0.710|GO:0006810_0.705|GO:0051234_0.705|GO:0007154_0.700|GO:0023052_0.699|GO:0007165_0.694|GO:0048513_0.693|GO:0044085_0.690|GO:0051641_0.689|GO:0006996_0.688|GO:0071944_0.687|GO:0022607_0.683|GO:0030030_0.682|GO:0007166_0.681|GO:0033036_0.681|GO:0120036_0.681|GO:0051649_0.680|GO:0070727_0.680|GO:0008104_0.678|GO:0007010_0.676|GO:0016192_0.676|GO:0045184_0.676|GO:0046907_0.675|GO:0072359_0.675|GO:0007017_0.674|GO:0007018_0.674|GO:0070925_0.674|GO:0030031_0.673|GO:0033365_0.673|GO:0000226_0.670|GO:0001578_0.670|GO:0005886_0.670|GO:0005929_0.670|GO:0006903_0.670|GO:0007224_0.670|GO:0007507_0.670|GO:0010970_0.670|GO:0030705_0.670|GO:0030990_0.670|GO:0031503_0.670|GO:0032991_0.670|GO:0035082_0.670|GO:0035735_0.670|GO:0042073_0.670|GO:0042995_0.670|GO:0044782_0.670|GO:0048193_0.670|GO:0048199_0.670|GO:0051640_0.670|GO:0051648_0.670|GO:0051650_0.670|GO:0051656_0.670|GO:0060271_0.670|GO:0061512_0.670|GO:0097712_0.670|GO:0098590_0.670|GO:0099111_0.670|GO:0120025_0.670|GO:0120031_0.670|GO:1905349_0.670|GO:0043228_0.647|GO:0043232_0.644|GO:0005634_0.630|GO:0005856_0.556|GO:0015630_0.547|GO:0005815_0.540|GO:0036064_0.540|GO:0003674_0.529|GO:0005488_0.472|GO:0048518_0.387|GO:0048522_0.379|GO:0030154_0.370|GO:0048869_0.370|GO:0048468_0.365|GO:0032879_0.356|GO:0007399_0.355|GO:0051128_0.354
|
IPR013087+166-195_168-190+|IPR032714+28-126+|IPR036236+162-191+|IPR051241+85-193+
|
— |
PF13815+28-126+Iguana/Dzip1-like_DAZ-interacting_protein_N-terminal
|
— |
PTHR21502+85-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
190-291
|
1.000
|
1-189
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
31925.070
|
10.498
|
14.500
|
28.866
|
9.278
|
49.141
|
50.859
|
17.526
|
11.340
|
48.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
357.416
|
270.345
|
306.158
|
251.592
|
185.025
|
311.371
|
100.169
|
401.148
|
44.975
|
845.284
|
502.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.241
|
-0.174
|
-0.476
|
0.764
|
-1.626
|
— |
-1.860
|
— | — | — | — | — |
No JSON data available for plots.