SCN Proteipedia

Hg_chrom3_TN10mRNA_6979

Organism: Heterodera glycines Gene Locus: chr3:14763648-14819250 Feature type: polypeptide

Protein Sequence

Length: 3,771 (Signal peptide: 1-27)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.956	1.153	1.013	1.875	1.18	1.299	0.925	1.207	0.807	1.122	0.695	1.232	1.09	1.015	1.212	0.871	0.809	0.828	0.612	0.718	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6614	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide\|transmembrane_domain	extracellular\|cell_membrane	nucleus	RKKR,RRRR,KQRRR	—	—	—	—	1-27	0.977	1.000	0.000	0.000	0.170	0.233	0.053	0.260	0.092	0.180	0.226	0.014	0.696	0.749

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000567	2.000	5.000	Hsc_gene_15042.t1;Hsc_gene_24978.t1;Hsc_gene_5262.t1;Hsc_gene_5262.t2;Hsc_gene_5262.t3	Hsc_gene_5262.t1;Hsc_gene_5262.t2;Hsc_gene_5262.t3;Hsc_gene_5264.t1;Hsc_gene_5266.t1	—	Q21313.1 Laminin-like protein epi-1 [Caenorhabditis elegans]	KAI1718221.1 laminin EGF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007155	GO:0005575_0.906\|GO:0110165_0.904\|GO:0008150_0.821\|GO:0071944_0.775\|GO:0009987_0.748\|GO:0032502_0.748\|GO:0048856_0.748\|GO:0032501_0.723\|GO:0007275_0.678\|GO:0030312_0.657\|GO:0031012_0.657\|GO:0062023_0.657\|GO:0065007_0.632\|GO:0050789_0.624\|GO:0048731_0.614\|GO:0030154_0.581\|GO:0048869_0.581\|GO:0050794_0.570\|GO:0005576_0.538\|GO:0016020_0.515\|GO:0005604_0.511	IPR000034+1632-1833_1683-1813_1703-1816+\|IPR000742+487-524_582-617_674-708_1434-1477_1525-1570_1869-1918_1991-2029_2030-2063_2126-2171+\|IPR001791+2762-2933_2764-2957_2787-2935_2795-2935_2964-3133_2966-3114_2986-3116_2994-3115_3139-3323_3144-3302_3161-3305_3186-3303_3395-3572_3398-3556_3420-3558_3429-3557_3578-3768_3579-3726_3599-3733_3608-3730+\|IPR002049+316-364_317-364_317-373_375-432_376-432_376-443_376-445_445-487_446-486_446-488_446-490_490-540_491-534_491-537_491-539_512-542_539-581_540-582_540-583_540-585_586-627_586-628_586-629_586-631_605-634_632-674_632-675_632-677_677-718_678-717_678-720_678-722_723-775_723-776_778-828_778-829_778-830_799-833_830-876_831-866_831-884_1432-1475_1433-1476_1433-1478_1433-1481_1452-1487_1479-1521_1479-1522_1524-1568_1524-1569_1524-1571_1545-1574_1572-1612_1572-1620_1572-1622_1591-1625_1833-1857_1869-1912_1870-1914_1870-1917_1870-1919_1886-1922_1920-1975_1945-1973_1946-1980_1977-2028_1978-2028_1978-2030_2031-2071_2031-2075_2077-2123_2078-2122_2078-2124_2096-2127_2125-2167_2125-2170_2125-2171_2125-2172_2144-2176+\|IPR008211+34-315_36-316_41-313+\|IPR010307+2652-2771+\|IPR013320+2143-2949_2965-3133_3144-3324_3396-3570_3577-3742+\|IPR050440+628-740+	SM00136+34-315+\|SM00180+317-373_376-443_446-488_491-537_540-583_586-629_632-675_678-720_723-775_778-828_831-884_1433-1476_1479-1521_1524-1569_1572-1620_1870-1917_1920-1975_1978-2028_2031-2075_2078-2122_2125-2170+\|SM00181+487-524_582-617_674-708_1434-1477_1525-1570_1869-1918_1991-2029_2030-2063_2126-2171+\|SM00281+1683-1813+\|SM00282+2787-2935_2986-3116_3161-3305_3420-3558_3599-3733+	PF00052+1703-1816+Laminin_B_(Domain_IV)\|PF00053+317-364_376-432_446-486_491-534_540-582_586-628_632-674_678-717_723-775_778-828_831-866_1433-1481_1524-1568_1572-1620_1833-1857_1870-1914_1920-1975_1978-2028_2031-2075_2078-2122_2125-2167+Laminin_EGF_domain\|PF00055+41-313+Laminin_N-terminal_(Domain_VI)\|PF02210+2795-2935_2994-3115_3186-3303_3429-3557_3608-3730+Laminin_G_domain\|PF06009+2652-2771+Laminin_Domain_II	G3DSA:2.10.25.10:FF:000011+830-874+Cadherin_EGF_LAG_seven-pass_G-type_receptor\|G3DSA:2.10.25.10:FF:000034+587-631+Laminin_subunit_alpha_3\|G3DSA:2.10.25.10:FF:000051+1978-2030+Laminin_subunit_alpha_4\|G3DSA:2.10.25.10:FF:000069+342-449+Laminin_subunit_alpha_1\|G3DSA:2.10.25.10:FF:000082+540-586+Laminin_subunit_alpha_1\|G3DSA:2.10.25.10:FF:000083+1432-1479+Laminin_subunit_alpha\|G3DSA:2.10.25.10:FF:000090+777-829+laminin_subunit_alpha\|G3DSA:2.10.25.10:FF:000106+1844-1923+Heparan_sulfate_proteoglycan_2\|G3DSA:2.10.25.10:FF:000188+2124-2173+Laminin_subunit_gamma_2\|G3DSA:2.10.25.10:FF:000209+632-678_1524-1571+Laminin_subunit_alpha_5\|G3DSA:2.10.25.10:FF:000388+723-776+Laminin_subunit_alpha\|G3DSA:2.10.25.10:FF:000407+1573-1621+Laminin_subunit_alpha-3	PTHR10574+628-740+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	2557-2666;3318-3408	3.000	1-2556;2667-3317;3409-3771	2y38_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.621	416252.630	5.868	-34.500	25.590	9.573	46.645	53.355	12.941	12.649	53.726

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	3443.779	3152.141	1563.788	3866.204	4112.720	3476.813	2028.351	1282.286	430.911	7437.488	4434.669

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.240	0.158	1.414	—	-0.227	-0.768	-1.548	0.805	-4.211	—	—	—	—

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