Hg_chrom3_TN10mRNA_6997
Organism: Heterodera glycines Gene Locus: chr3:14935434-14939177 Feature type: polypeptideProtein Sequence
Length: 529
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.033 | 0.659 | 0.791 | 0.652 | 0.63 | 1.309 | 1.238 | 0.851 | 1.26 | 1.941 | 0.401 | 2.113 | 1.26 | 0.836 | 0.887 | 1.08 | 0.806 | 0.802 | 1.6 | 0.5 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6631
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
40-60
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.078
|
0.212
|
0.015
|
0.143
|
0.425
|
0.459
|
0.418
|
0.066
|
0.577
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002021
|
3.000
|
1.000
|
Hsc_gene_15273.t1
|
Hsc_gene_15273.t1
|
— |
Q8BN82.2 Sialin [Mus musculus]
|
KAI1729016.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.957|GO:0009987_0.885|GO:0005575_0.845|GO:0110165_0.845|GO:0051179_0.793|GO:0051234_0.793|GO:0006810_0.792|GO:0003674_0.778|GO:0016020_0.739|GO:0055085_0.734|GO:0071944_0.696|GO:0005886_0.694|GO:0005215_0.673|GO:0022857_0.673|GO:0005622_0.563|GO:0043226_0.527|GO:0005737_0.518|GO:0015711_0.502
|
IPR011701+73-426+|IPR020846+1-467+|IPR036259+64-234_72-478_268-468+|IPR050382+51-473+
|
— |
PF07690+73-426+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000532+64-461+SLC_(SoLute_Carrier)_homolog
|
PTHR11662+51-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-43;475-529
|
1.000
|
44-474
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
57207.400
|
6.231
|
-1.500
|
16.824
|
10.019
|
37.240
|
62.760
|
8.696
|
8.129
|
50.473
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
601.823
|
76.741
|
625.464
|
332.871
|
243.590
|
1129.423
|
538.782
|
1184.759
|
949.223
|
371.700
|
619.210
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.800
|
1.980
|
-0.803
|
-0.483
|
2.228
|
-1.058
|
— |
-0.993
|
— | — | — | — | — |
No JSON data available for plots.