Hg_chrom3_TN10mRNA_6999
Organism: Heterodera glycines Gene Locus: chr3:14954354-14956711 Feature type: polypeptideProtein Sequence
Length: 291
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 1.279 | 1.062 | 0.711 | 1.145 | 0.881 | 0.532 | 2.234 | 1.604 | 1.254 | 1.041 | 0.809 | 1.336 | 0.793 | 1.052 | 0.884 | 0.789 | 1.041 | 1.322 | 0.606 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6633
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
— | — | — | — | — | — |
1-23
|
0.635
|
0.941
|
0.000
|
0.000
|
0.496
|
0.254
|
0.052
|
0.268
|
0.362
|
0.076
|
0.110
|
0.028
|
0.097
|
0.211
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008236
|
1.000
|
1.000
|
Hsc_gene_15268.t1
|
Hsc_gene_15268.t1
|
— |
Q20065.1 Prolyl 4-hydroxylase subunit alpha-2 [Caenorhabditis elegans]
|
XP_024498817.1 Prolyl 4-hydroxylase alpha-related protein PH4[alpha]EFB [Strongyloides ratti];CEF59606.1 Prolyl 4-hydroxylase alpha-related protein PH4[alpha]EFB [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005506|GO:0016705|GO:0031418
|
GO:0005575_0.824|GO:0110165_0.810|GO:0005622_0.755|GO:0005737_0.726|GO:0016020_0.717|GO:0043226_0.691|GO:0043229_0.676|GO:0043227_0.654|GO:0003674_0.652|GO:0043231_0.648|GO:0071944_0.630|GO:0005886_0.614|GO:0008150_0.599|GO:0003824_0.554|GO:0005773_0.547|GO:0012505_0.541
|
IPR005123+163-271+|IPR006620+87-270+|IPR044862+167-270+|IPR045054+40-275+
|
SM00702+87-270+
|
PF13640+167-270+2OG-Fe(II)_oxygenase_superfamily
|
G3DSA:2.60.120.620:FF:000011+75-270+Prolyl_alpha_subunit
|
PTHR10869+40-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-291
|
7zsc_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
33192.960
|
7.120
|
4.500
|
29.210
|
13.058
|
49.141
|
50.859
|
16.495
|
12.715
|
46.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
1061.237
|
6.463
|
8.460
|
7.127
|
3.375
|
62.496
|
4.257
|
794.419
|
0.514
|
4310.053
|
2463.108
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
4.222
|
-3.867
|
3.565
|
-7.402
|
-6.121
|
— |
-4.036
|
— | — |