Hg_chrom3_TN10mRNA_7004
Organism: Heterodera glycines Gene Locus: chr3:14986811-14993086 Feature type: polypeptideProtein Sequence
Length: 582
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 1.159 | 1.156 | 1.244 | 0.945 | 1.586 | 0.45 | 1.546 | 0.725 | 1.045 | 0.573 | 2.426 | 0.955 | 1.09 | 1.683 | 0.908 | 0.901 | 0.963 | 0.925 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6638
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.675
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRDPTGSQKNRRAPQRRRH
|
— | — |
31-51
|
0.996
|
— | — |
0.330
|
— | — |
0.891
|
0.075
|
0.014
|
0.374
|
0.015
|
0.028
|
0.016
|
0.006
|
0.053
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001953
|
4.000
|
0.000
|
0.000
|
— | — |
Q9GTD4.2 Nuclear hormone receptor family member nhr-71 [Caenorhabditis elegans]
|
KAI1718784.1 ligand-binding domain of nuclear hormone receptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.882|GO:0005575_0.810|GO:0110165_0.800|GO:0065007_0.799|GO:0050789_0.791|GO:0009987_0.782|GO:0003674_0.753|GO:0050794_0.747|GO:0005622_0.739|GO:0008152_0.704|GO:0043226_0.703|GO:0005488_0.693|GO:0044237_0.686|GO:0043170_0.685|GO:0019222_0.675|GO:0009058_0.674|GO:0009059_0.673|GO:0044249_0.673|GO:0043229_0.671|GO:0031323_0.670|GO:0060255_0.667|GO:0044238_0.658|GO:0010467_0.652|GO:0009889_0.645|GO:0031326_0.645|GO:0010556_0.644|GO:0010468_0.629|GO:0016020_0.628|GO:0080090_0.628|GO:0006139_0.608|GO:0034654_0.598|GO:0016070_0.596|GO:0090304_0.596|GO:0141187_0.594|GO:0032774_0.593|GO:0019219_0.575|GO:0006351_0.572|GO:0097159_0.572|GO:0051252_0.570|GO:2001141_0.569|GO:0006355_0.560|GO:0043227_0.560|GO:0043231_0.546|GO:0006357_0.510|GO:0006366_0.510
|
IPR000536+303-576_364-547_365-560+|IPR001628+54-125_54-129_56-123_57-73_57-83_73-88_106-114_114-122+|IPR013088+48-155+|IPR035500+295-574_333-571+|IPR049636+57-132+
|
SM00399+54-125+|SM00430+364-547+
|
PF00104+365-560+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+56-123+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR46587+27-571+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
207-327
|
2.000
|
1-206;328-582
|
4iqr_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
66513.550
|
7.401
|
9.000
|
27.148
|
10.481
|
50.172
|
49.828
|
15.120
|
12.027
|
50.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
orange
|
436.916
|
158.350
|
288.820
|
557.649
|
271.852
|
467.925
|
120.246
|
177.513
|
419.139
|
831.269
|
654.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
1.678
|
1.058
|
-1.068
|
0.799
|
-1.952
|
-1.508
|
— | — | — | — | — | — |
No JSON data available for plots.