SCN Proteipedia

Hg_chrom3_TN10mRNA_7005

Organism: Heterodera glycines Gene Locus: chr3:14986811-14993119 Feature type: polypeptide

Protein Sequence

Length: 593

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.922	1.177	1.134	1.221	0.927	1.557	0.442	1.602	0.749	1.048	0.562	2.48	0.937	1.103	1.686	0.964	0.885	0.945	0.908	0.794	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6638	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	30-Not_Clustered	0.675

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRDPTGSQKNRRAPQRRRH	—	—	42-62	0.996	—	—	0.002	—	—	0.889	0.078	0.015	0.374	0.016	0.029	0.016	0.007	0.053	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001953	4.000	0.000	0.000	—	—	Q9GTD4.2 Nuclear hormone receptor family member nhr-71 [Caenorhabditis elegans]	KAI1718784.1 ligand-binding domain of nuclear hormone receptor domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.882\|GO:0005575_0.811\|GO:0110165_0.801\|GO:0065007_0.800\|GO:0050789_0.791\|GO:0009987_0.783\|GO:0003674_0.753\|GO:0050794_0.748\|GO:0005622_0.739\|GO:0008152_0.704\|GO:0043226_0.703\|GO:0005488_0.694\|GO:0044237_0.686\|GO:0043170_0.685\|GO:0019222_0.676\|GO:0009058_0.674\|GO:0009059_0.674\|GO:0044249_0.674\|GO:0043229_0.672\|GO:0031323_0.671\|GO:0060255_0.668\|GO:0044238_0.659\|GO:0010467_0.653\|GO:0009889_0.645\|GO:0010556_0.645\|GO:0031326_0.645\|GO:0010468_0.630\|GO:0080090_0.629\|GO:0016020_0.628\|GO:0006139_0.608\|GO:0034654_0.599\|GO:0090304_0.597\|GO:0016070_0.596\|GO:0141187_0.595\|GO:0032774_0.594\|GO:0019219_0.577\|GO:0006351_0.574\|GO:0051252_0.572\|GO:0097159_0.572\|GO:2001141_0.571\|GO:0006355_0.561\|GO:0043227_0.561\|GO:0043231_0.545\|GO:0006357_0.511\|GO:0006366_0.511	IPR000536+314-587_375-558_376-571+\|IPR001628+65-136_65-140_67-134_68-84_68-94_84-99_117-125_125-133+\|IPR013088+59-166+\|IPR035500+323-585_344-582+\|IPR049636+68-143+	SM00399+65-136+\|SM00430+375-558+	PF00104+376-571+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+67-134+Zinc_finger,_C4_type_(two_domains)	—	PTHR46587+38-582+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	218-338	2.000	1-217;339-593	4iqr_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.674	67707.920	7.534	10.500	26.981	10.455	50.253	49.747	15.177	11.804	50.590

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	orange	436.916	158.350	288.820	557.649	271.852	467.925	120.246	177.513	419.139	831.269	654.642

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.636	1.678	1.058	-1.068	0.799	-1.952	-1.508	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser