SCN Proteipedia

Hg_chrom3_TN10mRNA_7013

Organism: Heterodera glycines Gene Locus: chr3:15050813-15058980 Feature type: polypeptide

Protein Sequence

Length: 891

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.24	1.54	0.918	0.542	1.122	2.619	0.641	1.515	0.624	0.804	0.612	1.452	1.309	1.079	0.825	1.267	0.846	0.68	0.518	0.561	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6645	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PRRKRAK	—	—	—	—	—	—	0.000	—	—	0.945	0.081	0.010	0.271	0.017	0.015	0.013	0.036	0.028	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002022	3.000	1.000	Hsc_gene_14319.t1	—	—	P34522.2 Homeobox protein prospero homolog 1 [Caenorhabditis elegans]	KAI6240857.1 Prospero domain-containing protein [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006355	GO:0008150_0.962\|GO:0005575_0.933\|GO:0110165_0.928\|GO:0009987_0.924\|GO:0005622_0.879\|GO:0016020_0.852\|GO:0043226_0.832\|GO:0032502_0.821\|GO:0048856_0.821\|GO:0032501_0.816\|GO:0043229_0.799\|GO:0007275_0.779\|GO:0043227_0.776\|GO:0048731_0.768\|GO:0048869_0.766\|GO:0030154_0.763\|GO:0043231_0.755\|GO:0048468_0.747\|GO:0007399_0.743\|GO:0005634_0.674\|GO:0005737_0.630\|GO:0065007_0.618\|GO:0050789_0.607\|GO:0003674_0.599\|GO:0050794_0.591\|GO:0048513_0.578\|GO:0005488_0.572\|GO:0009653_0.567\|GO:0000902_0.535\|GO:0007417_0.533\|GO:0009887_0.530\|GO:0001654_0.527\|GO:0007423_0.527\|GO:0048880_0.527\|GO:0150063_0.527\|GO:0090596_0.523\|GO:0048518_0.521\|GO:0048592_0.521\|GO:0008152_0.516\|GO:0043170_0.514\|GO:0019222_0.510\|GO:0048522_0.505\|GO:0031323_0.504\|GO:0044237_0.504\|GO:0044238_0.503	IPR009057+732-881+\|IPR023082+730-888_733-884+\|IPR037131+721-890+\|IPR039350+74-887+	—	PF05044+733-884+Homeo-prospero_domain	—	PTHR12198+74-887+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-409;538-727	2.000	410-537;728-891	1xpx_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.596	98347.210	5.159	-19.500	22.896	10.325	53.760	46.240	11.111	11.785	53.423

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	320.196	321.103	465.839	221.048	124.756	107.869	108.418	293.659	407.336	479.346	448.485

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.308	-0.676	-0.967	-0.855	—	—	1.341	-1.297	—	—	—	—	—

No JSON data available for plots.

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