Hg_chrom3_TN10mRNA_7019
Organism: Heterodera glycines Gene Locus: chr3:15113614-15121397 Feature type: polypeptideProtein Sequence
Length: 880
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.189 | 1.095 | 1.019 | 1.042 | 1.282 | 0.771 | 1.25 | 0.606 | 1.781 | 0.568 | 0.936 | 1.231 | 0.372 | 1.438 | 1.526 | 0.838 | 0.947 | 0.524 | 0.201 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6651
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.385
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PSEKRRL,RRNWSHSAVEFMKYRRL,KRRLETSLYATLPKHPKK
|
42-62
|
1.000
|
30-62
|
0.987
|
— | — |
0.000
|
— | — |
0.408
|
0.267
|
0.043
|
0.525
|
0.192
|
0.145
|
0.219
|
0.024
|
0.226
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003739
|
2.000
|
1.000
|
Hsc_gene_14879.t1
|
Hsc_gene_14879.t1
|
— |
Q09299.3 Putative RNA-binding protein EEED8.10 [Caenorhabditis elegans]
|
KAH7723109.1 Protein EEED8.10 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0005515
|
GO:0005575_0.911|GO:0110165_0.907|GO:0005622_0.838|GO:0005737_0.736|GO:0008150_0.639
|
IPR000504+142-234_143-230_144-176+|IPR001810+313-357_316-355+|IPR006553+391-417_418-442_493-518_652-677_678-702+|IPR012677+118-272+|IPR032675+346-485_487-611_612-709+|IPR035979+138-256+|IPR036047+309-369+
|
SM00360+143-230+|SM00367+391-417_418-442_493-518_652-677_678-702+
|
PF00076+144-176+RNA_recognition_motif|PF00646+316-355+F-box_domain
|
— |
PTHR13318+241-712+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
238-292;772-880
|
2.000
|
1-237;293-771
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
96971.400
|
6.359
|
-2.000
|
25.568
|
8.295
|
51.477
|
48.523
|
13.295
|
12.273
|
52.159
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1293.805
|
655.669
|
714.406
|
734.976
|
847.903
|
973.939
|
952.236
|
805.139
|
838.016
|
2900.286
|
2016.456
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.149
|
0.175
|
0.214
|
— |
-0.381
|
0.385
|
— | — | — | — | — |
No JSON data available for plots.