Hg_chrom3_TN10mRNA_7023
Organism: Heterodera glycines Gene Locus: chr3:15138408-15145354 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 0.788 | 0.986 | 0.935 | 1.102 | 1.434 | 0.847 | 1.102 | 1.092 | 1.306 | 0.642 | 0.997 | 1.271 | 0.913 | 1.557 | 1.09 | 1.0 | 0.719 | 1.173 | 0.748 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6654
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.729
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRKKRQWKRRKMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.126
|
0.034
|
0.007
|
0.222
|
0.405
|
0.445
|
0.468
|
0.034
|
0.617
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001248
|
2.000
|
3.000
|
Hsc_gene_14881.t1;Hsc_gene_14881.t2;Hsc_gene_14881.t3
|
Hsc_gene_14881.t1;Hsc_gene_14881.t2;Hsc_gene_14881.t3
|
— |
Q10944.3 Putative acid phosphatase 5 [Caenorhabditis elegans]
|
KAI1706900.1 histidine phosphatase superfamily (branch 2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.789|GO:0110165_0.781|GO:0008150_0.779|GO:0009987_0.727|GO:0003674_0.658|GO:0016020_0.651|GO:0005622_0.577|GO:0043226_0.555|GO:0043229_0.528|GO:0065007_0.513|GO:0043227_0.507
|
IPR000560+58-357_58-381+|IPR029033+58-421_58-427+|IPR033379+59-73_319-335+|IPR050645+7-409+
|
— |
PF00328+58-357+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+7-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;497-590
|
1.000
|
4-496
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
66417.240
|
7.213
|
5.500
|
26.102
|
10.847
|
48.814
|
51.186
|
14.068
|
12.034
|
48.814
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1294.693
|
521.356
|
1210.564
|
1026.196
|
1241.112
|
1847.209
|
1445.059
|
1368.793
|
1740.301
|
1111.448
|
1380.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.987
|
0.840
|
-0.130
|
0.242
|
0.590
|
-0.348
|
-0.547
|
— | — | — | — | — | — |
No JSON data available for plots.