Hg_chrom3_TN10mRNA_7025
Organism: Heterodera glycines Gene Locus: chr3:15176646-15184535 Feature type: polypeptideProtein Sequence
Length: 712
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.339 | 1.502 | 0.587 | 0.339 | 0.492 | 2.233 | 1.522 | 3.652 | 0.468 | 0.797 | 0.468 | 3.305 | 0.546 | 1.296 | 0.43 | 1.304 | 0.783 | 0.362 | 0.648 | 0.413 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6656
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.453
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,KRPMNAFMVWSRGQRKKMA,KKLEELEKRPFIDEAKRLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.852
|
0.205
|
0.011
|
0.284
|
0.060
|
0.049
|
0.036
|
0.005
|
0.066
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008243
|
1.000
|
1.000
|
Hsc_gene_14888.t1
|
Hsc_gene_14888.t1
|
— |
Q21305.2 Transcription factor sox-2 [Caenorhabditis elegans]
|
KAF7638249.1 HMG box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.921|GO:0032502_0.818|GO:0048856_0.798|GO:0032501_0.779|GO:0007275_0.747|GO:0009987_0.714|GO:0005575_0.640|GO:0003674_0.634|GO:0048731_0.624|GO:0005488_0.615|GO:0003676_0.603|GO:0097159_0.603|GO:0065007_0.602|GO:0050789_0.586|GO:0050794_0.583|GO:0007399_0.571|GO:0110165_0.558|GO:0003677_0.523|GO:0043565_0.523
|
IPR009071+301-375_302-366_302-374+|IPR036910+289-375_300-383+|IPR050140+262-520+
|
SM00398+301-375+
|
PF00505+302-366+HMG_(high_mobility_group)_box
|
G3DSA:1.10.30.10:FF:000002+300-381+transcription_factor_Sox-2
|
PTHR10270+262-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-472;673-712
|
1.000
|
473-672
|
6wx9_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
74557.310
|
7.257
|
19.000
|
18.680
|
11.517
|
47.753
|
52.247
|
12.500
|
6.180
|
58.006
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
592.921
|
1716.981
|
685.107
|
534.815
|
195.473
|
328.072
|
391.983
|
299.951
|
25.802
|
1017.537
|
592.507
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.554
|
-1.820
|
-0.250
|
-1.483
|
0.761
|
0.267
|
— |
0.528
|
-5.405
|
4.562
|
— | — | — |
No JSON data available for plots.