Hg_chrom3_TN10mRNA_7030
Organism: Heterodera glycines Gene Locus: chr3:15208698-15212908 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.032 | 1.375 | 1.075 | 0.927 | 1.075 | 1.516 | 0.576 | 2.016 | 1.792 | 1.017 | 0.733 | 2.056 | 1.867 | 0.827 | 0.823 | 0.653 | 0.617 | 0.57 | 0.827 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6661
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.693
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.542
|
0.271
|
0.010
|
0.704
|
0.119
|
0.207
|
0.138
|
0.019
|
0.192
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001730
|
3.000
|
1.000
|
Hsc_gene_14891.t1
|
Hsc_gene_14891.t1
|
— |
A7SK27.1 Probable ethanolamine kinase [Nematostella vectensis]
|
KAH7718464.1 choline/ethanolamine kinase [Aphelenchus avenae]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.874|GO:0009987_0.757|GO:0003674_0.728|GO:0008152_0.727|GO:0044238_0.695|GO:0044237_0.682|GO:0003824_0.670|GO:0009058_0.664|GO:0006793_0.588|GO:0006796_0.587|GO:0044249_0.585|GO:0006629_0.577|GO:0019637_0.573|GO:0008610_0.571|GO:0044255_0.571|GO:0005575_0.570|GO:0110165_0.570|GO:0090407_0.564|GO:0016740_0.560|GO:0006644_0.559|GO:0008654_0.557|GO:0046486_0.511|GO:0006650_0.509|GO:0016772_0.505|GO:0045017_0.505|GO:0046474_0.505
|
IPR011009+36-362+
|
— |
PF01633+84-282+Choline/ethanolamine_kinase
|
— |
PTHR22603+36-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
42577.530
|
5.832
|
-5.500
|
25.269
|
15.054
|
45.430
|
54.570
|
12.903
|
12.366
|
44.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
423.671
|
188.499
|
176.718
|
171.330
|
248.794
|
298.227
|
334.395
|
521.650
|
208.286
|
969.990
|
643.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.319
|
-0.275
|
— |
0.507
|
0.276
|
— |
0.706
|
-0.502
|
— | — | — | — | — |
No JSON data available for plots.