Hg_chrom3_TN10mRNA_7033
Organism: Heterodera glycines Gene Locus: chr3:15225108-15226685 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 1.55 | 0.848 | 0.69 | 1.333 | 0.684 | 0.635 | 1.667 | 2.667 | 0.811 | 0.808 | 1.569 | 1.667 | 1.026 | 0.952 | 0.762 | 0.765 | 0.707 | 0.513 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6664
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.571
|
0.202
|
0.029
|
0.672
|
0.137
|
0.206
|
0.128
|
0.117
|
0.197
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001730
|
3.000
|
1.000
|
Hsc_gene_14891.t1
|
Hsc_gene_14891.t1
|
— |
O81024.1 Probable ethanolamine kinase [Arabidopsis thaliana]
|
KAI6214721.1 Ethanolamine kinase 1-like isoform X2 [Aphelenchoides besseyi]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.726|GO:0005575_0.707|GO:0110165_0.697|GO:0009987_0.645|GO:0008152_0.600|GO:0044238_0.581|GO:0044237_0.576|GO:0003674_0.571|GO:0005622_0.570|GO:0009058_0.560|GO:0005737_0.550|GO:0006793_0.501|GO:0019637_0.501
|
IPR011009+34-149+
|
— |
PF01633+83-149+Choline/ethanolamine_kinase
|
— |
PTHR22603+36-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
16905.400
|
5.987
|
-1.500
|
26.000
|
12.000
|
45.333
|
54.667
|
13.333
|
12.667
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
red
|
88.131
|
16.074
|
11.722
|
8.449
|
11.272
|
12.611
|
58.266
|
65.704
|
1.382
|
315.499
|
180.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.065
|
— | — | — |
2.215
|
2.281
|
— | — | — | — | — | — |
No JSON data available for plots.