Hg_chrom3_TN10mRNA_7035
Organism: Heterodera glycines Gene Locus: chr3:15232813-15237745 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.52 | 1.412 | 1.394 | 0.771 | 1.491 | 1.638 | 0.532 | 0.639 | 0.852 | 1.079 | 2.275 | 1.316 | 1.065 | 0.614 | 0.913 | 0.639 | 1.048 | 0.581 | 0.983 | 0.564 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6666
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKKMHEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.613
|
0.110
|
0.008
|
0.509
|
0.087
|
0.011
|
0.067
|
0.004
|
0.096
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001046
|
4.000
|
1.000
|
Hsc_gene_14893.t1
|
Hsc_gene_14893.t1
|
— |
A8WMM4.2 Zinc finger CCCH domain-containing protein 15 homolog [Caenorhabditis briggsae]
|
KAI1728969.1 DRG family regulatory protein, tma46 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0008150_0.775|GO:0005575_0.759|GO:0110165_0.756|GO:0005622_0.732|GO:0065007_0.626|GO:0005737_0.614|GO:0009987_0.514
|
IPR000571+56-82_56-83_133-170_135-169+|IPR032297+40-92+|IPR032378+191-280+|IPR036855+56-81+
|
SM00356+56-82_135-169+
|
PF16131+40-92+Torus_domain|PF16543+191-280+DRG_Family_Regulatory_Proteins,_Tma46
|
— |
PTHR12681+17-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46;255-313
|
1.000
|
47-254
|
7rr5_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
36398.360
|
9.257
|
11.000
|
37.380
|
8.307
|
60.703
|
39.297
|
20.767
|
16.613
|
42.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
225.261
|
83.877
|
90.420
|
140.331
|
152.467
|
153.667
|
301.200
|
136.199
|
256.496
|
396.334
|
336.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.606
|
0.743
|
— | — |
0.983
|
— |
1.291
|
— | — | — | — | — |
No JSON data available for plots.