Hg_chrom3_TN10mRNA_7036
Organism: Heterodera glycines Gene Locus: chr3:15233046-15237772 Feature type: polypeptideProtein Sequence
Length: 414
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.674 | 1.18 | 2.064 | 0.5 | 1.53 | 1.858 | 0.661 | 0.725 | 0.59 | 0.947 | 2.013 | 1.279 | 1.141 | 0.557 | 0.69 | 0.621 | 1.069 | 0.622 | 0.743 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6666
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKKMHEKR,KKKQKVLEDRTFGMKNKKL,KKQKVLEDRTFGMKNKKLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.583
|
0.057
|
0.005
|
0.470
|
0.055
|
0.033
|
0.070
|
0.001
|
0.114
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001046
|
4.000
|
1.000
|
Hsc_gene_14893.t1
|
Hsc_gene_14893.t1
|
— |
A8WMM4.2 Zinc finger CCCH domain-containing protein 15 homolog [Caenorhabditis briggsae]
|
KAI1721584.1 DRG family regulatory protein, tma46 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0008150_0.792|GO:0005575_0.742|GO:0110165_0.740|GO:0005622_0.720|GO:0065007_0.652|GO:0005737_0.588|GO:0009987_0.532
|
IPR000571+84-110_84-111_161-198_163-197+|IPR032297+64-120+|IPR032378+219-308+|IPR036855+84-109+
|
SM00356+84-110_163-197+
|
PF16131+64-120+Torus_domain|PF16543+219-308+DRG_Family_Regulatory_Proteins,_Tma46
|
— |
PTHR12681+1-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-74;281-414
|
1.000
|
75-280
|
7rr5_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
47350.550
|
4.869
|
-13.000
|
38.647
|
7.971
|
61.836
|
38.164
|
18.116
|
20.531
|
47.101
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
225.261
|
83.877
|
90.420
|
140.331
|
152.467
|
153.667
|
301.200
|
136.199
|
256.496
|
396.334
|
336.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.606
|
0.743
|
— | — |
0.983
|
— |
1.291
|
— | — | — | — | — |
No JSON data available for plots.