Hg_chrom3_TN10mRNA_7037
Organism: Heterodera glycines Gene Locus: chr3:15237989-15244687 Feature type: polypeptideProtein Sequence
Length: 575
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.153 | 0.768 | 0.379 | 0.54 | 1.072 | 0.803 | 0.849 | 0.609 | 1.507 | 1.481 | 0.606 | 1.944 | 1.449 | 1.07 | 0.71 | 0.919 | 1.197 | 1.291 | 0.936 | 0.716 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6667
|
— | — |
0.889
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.075
|
0.103
|
0.026
|
0.113
|
0.518
|
0.677
|
0.441
|
0.041
|
0.785
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003742
|
2.000
|
1.000
|
Hsc_gene_14894.t1
|
Hsc_gene_14894.t1;Hsc_gene_23044.t1
|
— |
Q28FF3.2 Solute carrier family 49 member A3 [Xenopus tropicalis]
|
KAI1721577.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.959|GO:0009987_0.922|GO:0006810_0.807|GO:0051179_0.807|GO:0051234_0.807|GO:0003674_0.776|GO:0055085_0.764|GO:0005575_0.750|GO:0110165_0.750|GO:0071944_0.723|GO:0005886_0.719|GO:0016020_0.719|GO:0005215_0.712|GO:0022857_0.712|GO:0071705_0.658|GO:0015695_0.585|GO:0015871_0.578|GO:0015101_0.561|GO:0015220_0.561|GO:0005622_0.504
|
IPR011701+77-425+|IPR036259+59-516_63-446+|IPR049680+54-520+
|
— |
PF07690+77-425+Major_Facilitator_Superfamily
|
— |
PTHR10924+54-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
524-575
|
1.000
|
1-523
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
62473.000
|
5.957
|
-2.500
|
17.217
|
10.087
|
37.391
|
62.609
|
8.696
|
8.522
|
51.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
374.227
|
555.378
|
349.009
|
431.004
|
548.741
|
499.265
|
898.185
|
359.369
|
21.386
|
255.845
|
155.363
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.900
|
-0.503
|
0.413
|
0.317
|
— |
0.858
|
-0.576
|
1.463
|
-3.729
|
4.548
|
— | — | — |
No JSON data available for plots.