Hg_chrom3_TN10mRNA_7039
Organism: Heterodera glycines Gene Locus: chr3:15254704-15262277 Feature type: polypeptideProtein Sequence
Length: 573
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.197 | 0.771 | 0.381 | 0.481 | 1.076 | 0.805 | 0.852 | 0.611 | 1.435 | 1.486 | 0.608 | 1.951 | 1.454 | 1.074 | 0.712 | 0.972 | 1.202 | 1.216 | 0.94 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6669
|
— | — |
0.889
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.073
|
0.107
|
0.023
|
0.117
|
0.506
|
0.703
|
0.453
|
0.036
|
0.771
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003742
|
2.000
|
1.000
|
Hsc_gene_14894.t1
|
Hsc_gene_14894.t1;Hsc_gene_23044.t1
|
— |
Q28FF3.2 Solute carrier family 49 member A3 [Xenopus tropicalis]
|
KAI1721577.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.960|GO:0009987_0.925|GO:0051179_0.816|GO:0051234_0.816|GO:0006810_0.815|GO:0003674_0.779|GO:0055085_0.768|GO:0005575_0.749|GO:0110165_0.749|GO:0071944_0.727|GO:0005886_0.723|GO:0016020_0.723|GO:0005215_0.716|GO:0022857_0.716|GO:0071705_0.663|GO:0015695_0.586|GO:0015871_0.578|GO:0015101_0.561|GO:0015220_0.561|GO:0005622_0.505
|
IPR011701+75-423+|IPR036259+57-517_61-444+|IPR049680+52-518+
|
— |
PF07690+75-423+Major_Facilitator_Superfamily
|
— |
PTHR10924+52-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;521-573
|
1.000
|
2-520
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
62162.460
|
5.958
|
-2.500
|
17.277
|
10.122
|
37.871
|
62.129
|
8.726
|
8.551
|
52.007
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
482.399
|
485.469
|
316.693
|
503.029
|
606.253
|
518.360
|
731.174
|
265.648
|
275.553
|
618.845
|
471.720
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.845
|
— |
0.776
|
0.237
|
— |
0.507
|
-1.071
|
1.604
|
— | — | — | — | — |
No JSON data available for plots.