Hg_chrom3_TN10mRNA_7041
Organism: Heterodera glycines Gene Locus: chr3:15269429-15271695 Feature type: polypeptideProtein Sequence
Length: 371
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.504 | 0.784 | 0.465 | 1.033 | 0.898 | 0.642 | 1.752 | 1.557 | 1.421 | 1.021 | 1.586 | 1.423 | 0.985 | 0.77 | 1.078 | 0.795 | 1.021 | 0.622 | 0.634 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6671
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
chloroplast
|
— | — | — |
4-54
|
1.000
|
1-21
|
0.914
|
0.716
|
0.000
|
0.000
|
0.327
|
0.296
|
0.008
|
0.708
|
0.123
|
0.316
|
0.279
|
0.025
|
0.219
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008244
|
1.000
|
1.000
|
Hsc_gene_23040.t1
|
Hsc_gene_23039.t1
|
— |
Q28283.1 Tribbles homolog 2 [Canis lupus familiaris]
|
KAI3421174.1 hypothetical protein GPALN_014803 [Globodera pallida]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.720|GO:0009987_0.663|GO:0065007_0.584|GO:0008152_0.566|GO:0050789_0.560|GO:0050794_0.545|GO:0005575_0.537|GO:0044237_0.537|GO:0009058_0.531|GO:0110165_0.523|GO:0043170_0.518|GO:0044249_0.506
|
IPR000719+38-364_225-356+|IPR011009+225-358+
|
— |
PF00069+225-356+Protein_kinase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-371
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
41607.940
|
7.551
|
6.500
|
24.528
|
11.590
|
46.900
|
53.100
|
14.016
|
10.512
|
47.978
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
57.511
|
1.220
|
30.206
|
79.309
|
42.790
|
37.431
|
34.480
|
4.145
|
123.919
|
72.576
|
94.580
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.389
|
5.882
|
1.507
|
-0.922
|
— | — |
-3.294
|
3.201
|
— | — | — | — | — |