SCN Proteipedia

Hg_chrom3_TN10mRNA_7049

Organism: Heterodera glycines Gene Locus: chr3:15310008-15317913 Feature type: polypeptide

Protein Sequence

Length: 840

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.817	0.941	1.147	2.422	1.468	1.374	0.85	0.833	0.767	0.547	0.812	0.7	0.397	0.984	1.603	1.259	1.19	0.685	2.198	0.21	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6679	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.929

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	extracellular	—	KRRS,RRRK,RRPPAERQRTRHRRC,KRLQLIPRHKTSEVEKRRE	—	—	—	—	—	—	0.000	—	—	0.312	0.284	0.042	0.397	0.088	0.059	0.190	0.088	0.260	0.825

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002025	1.000	3.000	Hsc_gene_23030.t1;Hsc_gene_23030.t2;Hsc_gene_23030.t3	—	—	D3YXG0.1 Hemicentin-1 [Mus musculus]	XP_039259106.1 A disintegrin and metalloproteinase with thrombospondin motifs adt-1-like isoform X2 [Styela clava]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.934\|GO:0005575_0.852\|GO:0110165_0.843\|GO:0009987_0.775\|GO:0065007_0.696\|GO:0050789_0.685\|GO:0032502_0.600\|GO:0048856_0.584\|GO:0032501_0.566\|GO:0016020_0.564\|GO:0003674_0.543\|GO:0071944_0.540\|GO:0050794_0.535\|GO:0071840_0.532\|GO:0016043_0.528\|GO:0050896_0.518\|GO:0007275_0.505\|GO:0005622_0.504	IPR000884+29-85_32-85_33-84_87-136_88-135_138-187_138-190_140-189_189-237_192-237_194-236_239-287_241-265_241-386_387-475_390-447_392-419_600-655_603-655_782-840_785-840+\|IPR036383+31-84_31-85_86-134_86-135_135-180_135-183_181-239_189-231_239-268_240-287_386-419_387-439+\|IPR052065+67-190+	SM00209+32-85_87-136_138-190_192-237_239-287_390-447_603-655_785-840+	PF00090+33-84_88-135_140-189_194-236_241-265_392-419+Thrombospondin_type_1_domain	—	PTHR22906+67-190+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	495-781	2.000	1-494;782-840	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.671	93225.320	5.569	-9.000	30.000	6.667	55.476	44.524	14.881	15.119	57.262

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	blue	783.587	60.111	37.685	27.004	45.202	176.978	74.731	77.915	47.665	3205.085	1851.905

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.901	-1.291	—	0.709	1.987	-1.233	-1.300	—	-6.206	—	-5.718	—	—

No JSON data available for plots.

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