SCN Proteipedia

Hg_chrom3_TN10mRNA_7050

Organism: Heterodera glycines Gene Locus: chr3:15319925-15321725 Feature type: polypeptide

Protein Sequence

Length: 152

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.377	0.612	0.12	0.454	0.877	0.843	0.392	0.658	1.901	2.4	0.299	0.774	2.376	0.506	0.537	1.504	0.971	1.096	0.0	0.967	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6680	—	—	1.111	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	—	16-36	0.894	—	—	—	—	0.000	—	—	0.124	0.070	0.032	0.172	0.340	0.629	0.410	0.084	0.309	0.187

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008248	1.000	1.000	Hsc_gene_23028.t1	Hsc_gene_23028.t1;Hsc_gene_23029.t1	—	—	KAI6216845.1 Transmembrane protein [Aphelenchoides besseyi]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.929\|GO:0008150_0.926\|GO:0110165_0.922\|GO:0016020_0.891\|GO:0071944_0.887\|GO:0005886_0.881\|GO:0006810_0.877\|GO:0051179_0.877\|GO:0051234_0.877\|GO:0009987_0.874\|GO:0005622_0.784\|GO:0043226_0.745\|GO:0051641_0.723\|GO:0043227_0.715\|GO:0071840_0.715\|GO:0016043_0.711\|GO:0051649_0.709\|GO:0006996_0.692\|GO:0033036_0.692\|GO:0008104_0.691\|GO:0070727_0.691\|GO:0046907_0.688\|GO:0016192_0.686\|GO:0044085_0.684\|GO:0022607_0.683\|GO:0048193_0.678\|GO:0033365_0.676\|GO:0051640_0.675\|GO:0007010_0.674\|GO:0030030_0.674\|GO:0051656_0.674\|GO:0120036_0.674\|GO:0000226_0.670\|GO:0001578_0.670\|GO:0005929_0.670\|GO:0006903_0.670\|GO:0007017_0.670\|GO:0007018_0.670\|GO:0010970_0.670\|GO:0030031_0.670\|GO:0030705_0.670\|GO:0030990_0.670\|GO:0031503_0.670\|GO:0032991_0.670\|GO:0035082_0.670\|GO:0035735_0.670\|GO:0042073_0.670\|GO:0042995_0.670\|GO:0044782_0.670\|GO:0048199_0.670\|GO:0051648_0.670\|GO:0051650_0.670\|GO:0060271_0.670\|GO:0061512_0.670\|GO:0070925_0.670\|GO:0097712_0.670\|GO:0098590_0.670\|GO:0099111_0.670\|GO:0120025_0.670\|GO:0120031_0.670\|GO:1905349_0.670\|GO:0005737_0.527	IPR019184+6-137_17-121+	—	PF09799+17-121+Predicted_membrane_protein	—	PTHR13531+6-137+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-152	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.505	16617.670	5.633	-1.000	11.842	13.158	34.211	65.789	5.921	5.921	46.053

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	darkgreen	228.845	27.781	87.240	34.747	11.664	10.153	7.179	20.962	924.630	232.827	529.314

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.418	—	-1.216	-1.605	—	—	0.949	-1.411	—	-4.605	—	—	—

No JSON data available for plots.

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