Hg_chrom3_TN10mRNA_7052
Organism: Heterodera glycines Gene Locus: chr3:15330964-15337554 Feature type: polypeptideProtein Sequence
Length: 580
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.962 | 1.083 | 1.348 | 0.535 | 1.897 | 2.608 | 0.657 | 1.034 | 1.073 | 1.421 | 0.627 | 1.42 | 0.575 | 0.265 | 1.654 | 0.616 | 0.537 | 0.81 | 0.398 | 0.609 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6682
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PLVKRRP,VKRRPRKVYRRVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.475
|
0.091
|
0.051
|
0.504
|
0.085
|
0.208
|
0.174
|
0.012
|
0.098
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008250
|
1.000
|
1.000
|
Hsc_gene_23026.t1
|
Hsc_gene_23026.t1
|
— |
Q6GQI5.1 Coiled-coil domain-containing protein 93 [Xenopus laevis]
|
KAI3421167.1 Coiled-coil domain-containing protein 93 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0009987_0.925|GO:0005575_0.919|GO:0110165_0.915|GO:0005622_0.876|GO:0016020_0.816|GO:0043226_0.805|GO:0051179_0.803|GO:0051234_0.783|GO:0043229_0.782|GO:0006810_0.778|GO:0051641_0.775|GO:0051649_0.747|GO:0043227_0.738|GO:0046907_0.727|GO:0016192_0.722|GO:0048193_0.698|GO:0043231_0.697|GO:0051668_0.688|GO:0016197_0.685|GO:0098876_0.681|GO:0032456_0.675|GO:0006892_0.670|GO:0006893_0.670
|
IPR019159+251-562+|IPR039116+2-568+|IPR048747+15-119+
|
— |
PF09762+251-562+CCDC93_coiled-coil_domain|PF21673+15-119+CCDC93_protein_N-terminal_domain
|
— |
PTHR16441+2-568+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;175-405;554-580
|
2.000
|
12-174;406-553
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
66496.090
|
4.530
|
-32.000
|
33.103
|
6.724
|
55.517
|
44.483
|
14.310
|
18.793
|
41.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
908.759
|
1507.094
|
1207.274
|
996.440
|
1027.648
|
1090.648
|
1089.866
|
1149.783
|
804.736
|
346.483
|
542.877
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.549
|
-0.734
|
-0.169
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.