Hg_chrom3_TN10mRNA_7054
Organism: Heterodera glycines Gene Locus: chr3:15345914-15348135 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.109 | 1.216 | 0.727 | 0.424 | 0.718 | 0.71 | 0.549 | 1.231 | 0.821 | 1.497 | 0.746 | 0.543 | 1.966 | 1.183 | 1.57 | 0.791 | 0.858 | 1.212 | 2.13 | 0.814 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6684
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
1-21
|
1.000
|
29-79
|
0.946
|
— | — |
0.000
|
— | — |
0.120
|
0.059
|
0.002
|
0.191
|
0.408
|
0.161
|
0.901
|
0.009
|
0.092
|
0.286
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008251
|
1.000
|
1.000
|
Hsc_gene_23024.t1
|
Hsc_gene_23024.t1
|
— |
Q09363.1 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase sqv-8 [Caenorhabditis elegans]
|
KAH7727383.1 gactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015018|GO:0016020
|
GO:0008150_0.770|GO:0003674_0.694|GO:0009987_0.653|GO:0005575_0.635|GO:0110165_0.635|GO:0003824_0.609|GO:0016020_0.566|GO:0008152_0.552|GO:0016740_0.521
|
IPR005027+21-303_67-295_88-295+|IPR029044+67-303_68-318+
|
— |
PF03360+88-295+Glycosyltransferase_family_43
|
G3DSA:3.90.550.10:FF:000044+67-312+Galactosylgalactosylxylosylprotein_3-beta-glucuronosyltransferase
|
PTHR10896+21-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-325
|
1v84_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
37099.870
|
10.262
|
18.000
|
23.385
|
15.077
|
42.154
|
57.846
|
15.077
|
8.308
|
49.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
363.060
|
270.251
|
273.969
|
237.148
|
246.714
|
246.125
|
238.042
|
297.425
|
380.051
|
624.722
|
519.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.211
|
-0.325
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.