Hg_chrom3_TN10mRNA_7055
Organism: Heterodera glycines Gene Locus: chr3:15350408-15353162 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 1.725 | 1.056 | 0.556 | 1.075 | 0.662 | 0.883 | 1.452 | 0.645 | 1.177 | 1.222 | 1.898 | 0.806 | 0.496 | 1.777 | 0.876 | 1.058 | 0.587 | 0.248 | 1.233 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6685
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.860
|
0.119
|
0.016
|
0.240
|
0.053
|
0.027
|
0.062
|
0.012
|
0.095
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008252
|
1.000
|
1.000
|
Hsc_gene_23023.t1
|
Hsc_gene_23023.t1
|
— |
Q09651.1 Coiled-coil domain-containing protein 130 homolog [Caenorhabditis elegans]
|
KAF7638539.1 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398
|
GO:0008150_0.860|GO:0005575_0.669|GO:0110165_0.663|GO:0005622_0.612|GO:0009987_0.511|GO:0016020_0.502|GO:0043226_0.502
|
IPR007590+1-278_9-301+
|
— |
PF04502+9-301+Saf4/Yju2_protein
|
— |
PTHR12111+1-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-310
|
1.000
|
1-184
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
35171.680
|
9.922
|
18.500
|
31.935
|
10.323
|
54.516
|
45.484
|
19.677
|
12.258
|
49.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
628.189
|
936.051
|
349.443
|
325.403
|
425.269
|
370.364
|
649.232
|
697.518
|
339.427
|
1086.277
|
766.198
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.651
|
-1.662
|
— |
0.354
|
— |
0.821
|
0.812
|
— | — | — | — | — | — |
No JSON data available for plots.