SCN Proteipedia

Hg_chrom3_TN10mRNA_7061

Organism: Heterodera glycines Gene Locus: chr3:15389111-15398890 Feature type: polypeptide

Protein Sequence

Length: 728

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.198	1.757	0.799	0.616	0.801	1.303	0.932	1.236	1.435	0.91	0.52	1.939	0.916	1.03	0.589	1.805	0.811	0.687	0.528	0.444	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6691	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	RKQVSSHIQVLARKKQRE	—	—	—	—	—	—	0.000	—	—	0.677	0.182	0.018	0.396	0.092	0.128	0.171	0.052	0.163	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008256	1.000	1.000	Hsc_gene_23009.t1	Hsc_gene_23009.t1;Hsc_gene_23010.t1	—	Q19849.4 Transcription enhancer factor-like protein egl-44 [Caenorhabditis elegans]	KAI3421141.1 TEA/ATTS domain [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355	GO:0008150_0.969\|GO:0009987_0.927\|GO:0065007_0.921\|GO:0050789_0.908\|GO:0005575_0.877\|GO:0050794_0.875\|GO:0003674_0.858\|GO:0005488_0.834\|GO:0110165_0.825\|GO:0008152_0.816\|GO:0019222_0.816\|GO:0043170_0.814\|GO:0031323_0.808\|GO:0044237_0.808\|GO:0044238_0.806\|GO:0080090_0.806\|GO:0009058_0.802\|GO:0009059_0.802\|GO:0044249_0.802\|GO:0060255_0.797\|GO:0010467_0.795\|GO:0097159_0.794\|GO:0006139_0.792\|GO:0009889_0.789\|GO:0031326_0.788\|GO:0010556_0.782\|GO:0034654_0.782\|GO:0016070_0.781\|GO:0090304_0.781\|GO:0003676_0.780\|GO:0010468_0.779\|GO:0141187_0.779\|GO:0032774_0.777\|GO:0005622_0.776\|GO:0019219_0.770\|GO:0051252_0.770\|GO:0016020_0.769\|GO:0006351_0.762\|GO:0006355_0.750\|GO:2001141_0.750\|GO:0043226_0.745\|GO:0043229_0.734\|GO:0003677_0.715\|GO:0032501_0.702\|GO:0043227_0.695\|GO:0043231_0.695\|GO:0032502_0.684\|GO:0048518_0.682\|GO:0043565_0.666\|GO:0005634_0.654\|GO:0003690_0.653\|GO:1990837_0.653\|GO:0048522_0.649\|GO:0048856_0.637\|GO:0000976_0.635\|GO:0001067_0.635\|GO:0009893_0.603\|GO:0009891_0.591\|GO:0010604_0.591\|GO:0031325_0.591\|GO:0007275_0.589\|GO:0031328_0.585\|GO:0010557_0.581\|GO:0045935_0.574\|GO:0051254_0.573\|GO:0140110_0.564\|GO:1902680_0.557\|GO:0006366_0.555\|GO:0045893_0.555\|GO:0006357_0.546\|GO:0003700_0.544\|GO:0048731_0.517	IPR000818+122-193_124-200_128-194_131-145_164-178_164-192_179-193+\|IPR038096+125-204+\|IPR041086+502-706+\|IPR050937+68-702+	SM00426+122-193+	PF01285+128-194+TEA/ATTS_domain\|PF17725+502-706+YAP_binding_domain	G3DSA:2.70.50.80:FF:000005+496-713+Transcription_enhancer_factor-like_protein_egl-44	PTHR11834+68-702+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	90-402	2.000	1-89;403-728	5emw_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.849	77093.010	5.224	-12.000	17.995	7.967	48.214	51.786	8.791	9.203	59.341

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	781.807	2045.427	581.968	688.461	540.903	778.143	604.515	1108.949	190.200	897.116	594.152

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.043	-1.708	0.351	-0.380	0.539	-0.355	0.412	-0.736	—	—	—	—	—

No JSON data available for plots.

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