SCN Proteipedia

Hg_chrom3_TN10mRNA_7065

Organism: Heterodera glycines Gene Locus: chr3:15428072-15431219 Feature type: polypeptide

Protein Sequence

Length: 450

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.775	1.344	1.051	0.307	0.852	1.311	0.423	2.556	1.136	1.051	0.673	2.222	1.173	1.068	1.497	1.492	0.765	0.741	0.684	0.85	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6695	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	KRQTGTDKMPPTERRQLK	—	—	—	—	—	—	0.000	—	—	0.070	0.089	0.045	0.100	0.376	0.188	0.593	0.015	0.343	0.645

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003746	1.000	2.000	Hsc_gene_23005.t1;Hsc_gene_23005.t2	Hsc_gene_23005.t1;Hsc_gene_23005.t2	—	—	KAI1722158.1 receptor family ligand binding region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.962\|GO:0009987_0.908\|GO:0005575_0.905\|GO:0110165_0.905\|GO:0016020_0.849\|GO:0003674_0.842\|GO:0050896_0.818\|GO:0032501_0.804\|GO:0008152_0.790\|GO:0044238_0.784\|GO:0009058_0.771\|GO:0044237_0.770\|GO:0006139_0.744\|GO:0034654_0.738\|GO:0071944_0.738\|GO:0042221_0.731\|GO:0005886_0.719\|GO:0009605_0.702\|GO:0003824_0.694\|GO:0003008_0.692\|GO:0006793_0.687\|GO:0006796_0.687\|GO:0040011_0.681\|GO:0007610_0.680\|GO:1901135_0.680\|GO:0044281_0.679\|GO:0050877_0.678\|GO:0050890_0.677\|GO:0007600_0.676\|GO:0019637_0.676\|GO:0042330_0.676\|GO:0006935_0.675\|GO:1901137_0.673\|GO:0006163_0.670\|GO:0006164_0.670\|GO:0006182_0.670\|GO:0006753_0.670\|GO:0007606_0.670\|GO:0007635_0.670\|GO:0009117_0.670\|GO:0009150_0.670\|GO:0009152_0.670\|GO:0009165_0.670\|GO:0009187_0.670\|GO:0009190_0.670\|GO:0009259_0.670\|GO:0009260_0.670\|GO:0019693_0.670\|GO:0042048_0.670\|GO:0046068_0.670\|GO:0046390_0.670\|GO:0050893_0.670\|GO:0052652_0.670\|GO:0055086_0.670\|GO:0072521_0.670\|GO:0072522_0.670\|GO:0090407_0.670\|GO:1901293_0.670\|GO:0009975_0.655\|GO:0016829_0.654\|GO:0016849_0.654\|GO:0004383_0.650\|GO:0098590_0.587\|GO:0042995_0.579\|GO:0120025_0.574\|GO:0043005_0.563\|GO:0044297_0.555	IPR028082+267-407+\|IPR052612+236-439+	—	—	—	PTHR44755+236-439+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-72;112-250	2.000	73-111;251-450	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.831	51504.080	8.722	15.500	27.778	13.111	53.778	46.222	16.889	10.889	48.222

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	101.122	81.679	112.343	70.267	19.081	17.893	30.020	46.746	379.819	15.784	171.799

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.354	-0.568	-1.916	—	0.757	1.287	—	4.339	—	—	—	—

No JSON data available for plots.

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