SCN Proteipedia

Hg_chrom3_TN10mRNA_7068

Organism: Heterodera glycines Gene Locus: chr3:15467372-15479834 Feature type: polypeptide

Protein Sequence

Length: 1,592

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.964	1.329	0.959	1.386	0.9	1.369	0.606	2.575	0.81	0.908	0.914	1.182	0.925	0.797	1.256	1.454	1.112	0.714	0.387	0.443	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6698	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.708

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KHKR,KRKR,RKRK,RKAAEEEEERRRKNG,KRIILLLHHQRDRRHRH,KKTMRQHRRVHGLSRRRSR,RRLKRIILLLHHQRDRRHR,RRRKNGIGKAEQKHQQKQGRR	—	—	—	—	—	—	0.000	—	—	0.922	0.059	0.024	0.209	0.034	0.015	0.013	0.011	0.103	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008260	1.000	1.000	Hsc_gene_22997.t1	—	—	—	KAI3413203.1 ZnF_C2H2 protein [Globodera pallida]	No	-0.500

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.972\|GO:0009987_0.935\|GO:0065007_0.933\|GO:0050789_0.925\|GO:0050794_0.914\|GO:0008152_0.864\|GO:0043170_0.864\|GO:0019222_0.851\|GO:0031323_0.846\|GO:0044237_0.846\|GO:0044238_0.846\|GO:0060255_0.841\|GO:0009058_0.834\|GO:0009059_0.834\|GO:0044249_0.834\|GO:0080090_0.829\|GO:0010467_0.825\|GO:0009889_0.818\|GO:0031326_0.818\|GO:0010556_0.817\|GO:0006139_0.816\|GO:0090304_0.816\|GO:0034654_0.814\|GO:0016070_0.812\|GO:0141187_0.812\|GO:0032774_0.810\|GO:0010468_0.804\|GO:0019219_0.787\|GO:0051252_0.781\|GO:0006351_0.774\|GO:0006355_0.765\|GO:2001141_0.765\|GO:0006366_0.744\|GO:0006357_0.740	IPR013087+68-90_68-95_70-90_96-118_96-123_98-118_409-431_437-459_678-701_780-802_808-830_810-830_893-915_921-943_1007-1031_1009-1031_1038-1061_1084-1106_1112-1134_1310-1332_1340-1362_1342-1362_1432-1454_1434-1454_1505-1527_1537-1559+\|IPR036236+68-118+\|IPR050688+1198-1560+	SM00355+68-90_96-118_409-431_437-459_678-701_780-802_808-830_893-915_921-943_1007-1031_1038-1061_1084-1106_1112-1134_1310-1332_1340-1362_1432-1454_1505-1527_1537-1559+	—	—	PTHR24403+1198-1560+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-82;240-579;831-879;1139-1246;1584-1592	4.000	83-239;580-830;880-1138;1247-1583	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.853	176471.510	8.274	65.000	28.015	10.490	56.030	43.970	17.337	10.678	54.209

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkgrey	1052.786	1039.974	753.993	688.702	605.486	731.757	1009.187	774.532	564.164	2081.455	1431.188

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.693	-0.732	—	-0.217	0.288	0.473	—	0.522	—	—	—	—	—

No JSON data available for plots.

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