Hg_chrom3_TN10mRNA_7069
Organism: Heterodera glycines Gene Locus: chr3:15481275-15489895 Feature type: polypeptideProtein Sequence
Length: 807
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 1.21 | 1.104 | 0.427 | 1.095 | 1.239 | 0.693 | 1.363 | 1.184 | 0.921 | 0.958 | 1.385 | 1.136 | 1.12 | 1.138 | 1.204 | 0.914 | 0.845 | 1.049 | 0.838 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6699
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.472
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|lysosome_vacuole
|
— |
FKVK,PNEKRRP,KHNKKKKKGDGK,KKNVITIGKVKKRVT,RKLFEDFHNSRKRIL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.257
|
0.225
|
0.029
|
0.575
|
0.266
|
0.625
|
0.436
|
0.011
|
0.533
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008261
|
1.000
|
1.000
|
Hsc_gene_22994.t1
|
Hsc_gene_22994.t1
|
— |
G5EEM9.1 Intracellular phospholipase A1 [Caenorhabditis elegans]
|
KAI1728276.1 DDHD domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0008150_0.875|GO:0005575_0.859|GO:0110165_0.859|GO:0009987_0.820|GO:0005622_0.735|GO:0016020_0.654|GO:0005737_0.637|GO:0043226_0.609|GO:0043229_0.598|GO:0043227_0.522|GO:0043231_0.522|GO:0003674_0.519|GO:0065007_0.515|GO:0050789_0.503
|
IPR004177+435-800_436-799+|IPR029058+333-507+
|
SM01127+435-800+
|
PF02862+436-799+DDHD_domain
|
— |
PTHR23509+32-804+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;530-807
|
1.000
|
26-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
90586.910
|
6.894
|
5.000
|
27.261
|
11.029
|
51.301
|
48.699
|
14.622
|
12.639
|
51.177
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
1239.924
|
1205.681
|
1005.568
|
799.510
|
987.784
|
1197.252
|
1137.851
|
1160.007
|
1959.689
|
1144.781
|
1494.027
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.491
|
-0.730
|
-0.223
|
0.273
|
0.292
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.