Hg_chrom3_TN10mRNA_7070
Organism: Heterodera glycines Gene Locus: chr3:15490733-15495551 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.491 | 1.289 | 0.768 | 3.184 | 0.616 | 1.421 | 0.911 | 0.792 | 0.821 | 0.606 | 0.36 | 0.621 | 1.173 | 1.471 | 1.023 | 1.583 | 1.298 | 0.999 | 0.812 | 0.931 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6700
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.763
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.193
|
0.271
|
0.033
|
0.190
|
0.027
|
0.106
|
0.186
|
0.130
|
0.206
|
0.931
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008262
|
1.000
|
1.000
|
Hsc_gene_22996.t1
|
Hsc_gene_22996.t1
|
— |
O43291.2 Kunitz-type protease inhibitor 2 [Homo sapiens]
|
XP_002629902.2 Protein CBG21944 [Caenorhabditis briggsae];CAP38622.3 Protein CBG21944 [Caenorhabditis briggsae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.753|GO:0005575_0.695|GO:0110165_0.694|GO:0003674_0.622|GO:0065007_0.541|GO:0005488_0.504
|
IPR002223+31-77_49-77_50-76_133-188_134-187_135-187_162-172_172-187+|IPR006150+79-129_190-240_247-297_324-358+|IPR020901+54-72_165-183+|IPR028150+80-129_192-240_249-296+|IPR036880+45-83_49-77_125-189_129-189+|IPR053014+48-306+
|
SM00131+31-77_133-188+|SM00289+79-129_190-240_247-297_324-358+
|
PF00014+49-77_134-187+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF14625+80-129_192-240_249-296+Lustrin,_cysteine-rich_repeated_domain
|
— |
PTHR46339+48-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-379
|
1tfx_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
41175.210
|
6.638
|
1.000
|
16.887
|
10.026
|
46.966
|
53.034
|
8.971
|
7.916
|
64.116
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
648.695
|
13.210
|
22.746
|
22.414
|
16.647
|
17.434
|
37.612
|
17.659
|
8.932
|
2775.944
|
1590.082
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.117
|
— |
1.233
|
-6.673
|
— |
-6.799
|
— | — |
No JSON data available for plots.